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View Structure Prediction Details

Protein: DSL1
Organism: Saccharomyces cerevisiae
Length: 754 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DSL1.

Description E-value Query
Range
Subject
Range
DSL1 - Peripheral membrane protein needed for Golgi-to-ER retrograde traffic; forms a complex with Sec39p a...
DSL1_YEAST - Protein transport protein DSL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DSL1 PE=1...
0.0 [1..754] [1..754]

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Predicted Domain #1
Region A:
Residues: [1-754]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLFPNKGE IIRELLKDPL ILKNDSKRSN GSELELDSSD LLQREAILAN ELNILDNLKT  60
   61 FLNLIKEVKT NLNILELENC YYSLQSLRKK MRNNAAYLKQ SFNFQQSIST YVDTLHLELV 120
  121 STLYKILTNG FWKITENSIQ FTPTVEWGKD KVHIEYDTFM DFVAQQYFPK GSLDNQAWFI 180
  181 LDMTSADSQE QVRAKLNTIM KEYMNLSRIV SMIKNSIFIS GKEISYENEK NILVFSKSSS 240
  241 HGQHCVSTVL TSFEAVCDFM LDGLAFRDRK TLSYELGPLF NTEFTKFVKN NASIILESLD 300
  301 SPLKNLVSVI NNKLTRLVAK SEVTNWTHSG KEIQDLLMNK QLYYNLLLDK VLESHISEIR 360
  361 SIFEDPKKSW QNLEVVELTT SNTNTMSEKI GKNDSDVQNE KELHNAVSKD DDWNWEVEDD 420
  421 DADAWGDEID VNIDDEEEKT NQEKEKEPEE EENAWDEAWA IDENIDDASL ENGKEHLKAH 480
  481 DVGSLDKDHI EVTQLPKLFL AISQNFKSSF ADSHVDEQYF AYKYNLLQTS YMAMCTANFS 540
  541 HNWCQLYVDM RYLIERDEKL YRIKELTRNL LETKLNMKYR IVCQLIRHQL TEFRENERNP 600
  601 SWDATIEKLL PYILKEIVRP LQKIRGEEGS RYLLSFLNFL YNDCVTKEIL KWQIISEVNS 660
  661 ENLGELVSLL VNNTDIQLLA KEPSYKKMRE KFATMGKFLP LHLKEIMEMF YNGDFYLFAT 720
  721 DELIQWIELL FADTPLRRNA IDDIYEIRGT ALDD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle