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View Structure Prediction Details

Protein: YNL234W
Organism: Saccharomyces cerevisiae
Length: 426 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL234W.

Description E-value Query
Range		 Subject
Range
YNX4_YEAST - Uncharacterized globin-like protein YNL234W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...
YNL234W - Protein of unknown function with similarity to globins; has a functional heme-binding domain; transc...
gi|190409205 - gi|190409205|gb|EDV12470.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 0.0 [1..426] [1..426]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 6.0E-64 [171..326] [1..149]
HBB_MUSLU - Hemoglobin subunit beta OS=Mustela lutreola GN=HBB PE=1 SV=1
 2.0E-63 [164..297] [1..145]
HBB_MELCA - Hemoglobin subunit beta OS=Mellivora capensis GN=HBB PE=1 SV=1
 2.0E-63 [164..297] [1..145]
HBB_MELME - Hemoglobin subunit beta OS=Meles meles GN=HBB PE=1 SV=1
 3.0E-63 [164..297] [1..145]
HBB_LUTLU - Hemoglobin subunit beta OS=Lutra lutra GN=HBB PE=1 SV=1
 1.0E-62 [164..297] [1..145]
HBB_PHOVI - Hemoglobin subunit beta OS=Phoca vitulina GN=HBB PE=1 SV=1
 1.0E-62 [164..297] [1..145]
HBB_PROLO - Hemoglobin subunit beta OS=Procyon lotor GN=HBB PE=1 SV=1
 1.0E-62 [164..297] [1..145]
HBB_MACGG - Hemoglobin subunit beta OS=Macroderma gigas GN=HBB PE=1 SV=1
 1.0E-62 [164..297] [1..145]
HBB_CEBAL - Hemoglobin subunit beta OS=Cebus albifrons GN=HBB PE=1 SV=1
 1.0E-62 [164..297] [1..145]

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Predicted Domain #1
Region A:
Residues: [1-155] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGEKILHSQ LLTNSDMSSG NVHHTKPMMY NVTLPSYNSS SIGPVDNLKI NERPGSHDHS  60
   61 MRSEMSSKNS GSDFMPQSIS RSEGSVYQVK IDRGDSPNTE GFDFKVNARD LLLLRMSWDI 120
  121 LLREYLTPKE LKVFQALLYS NKHITSTERP YLNTA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [156-365] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDGMISKTID PTARPRKTKQ RDNDNKVDTA LFCSQFYDNL IAMDPLLEEY FPSLKHQAVS  60
   61 FCKVLDSAID NLENVHVLDD YIVKLGKRHS RILGIKTVGF EVMGKAFMTT LQDRFGSFLT 120
  121 LELKNLWGQL YSYLANCMIT AGKDPMEKIQ PDFSYNGDSV VLNFSIPKLA MHDISTVNKL 180
  181 QMVKTKNATI PHNITQVPTN KIPTEILLDN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.39794
Match: 1abwA_
Description: Hemoglobin, alpha-chain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.855532651898837 bayes_pls_golite062009
protein binding 0.197317321564222 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [366-426] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTPIKSDRE STPPISPKGS GSTKPSIGSS TVVESNTKKN NYDEKIHLLQ KTAQQKNCSI  60
   61 M

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score		 GO
Score		 GO
Term		 SCOP
Match		 SCOP Description
View Download 0.816 0.081 response to stress a.50.1 Anaphylotoxins (complement system)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle