| Protein: | POP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 875 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POP1.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..875] | [1..875] |
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0.0 | [5..685] | [1..589] |
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0.0 | [370..788] | [317..760] |
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0.0 | [370..788] | [438..872] |
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3.0E-45 | [229..382] | [52..205] |
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4.0E-45 | [227..695] | [93..535] |
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1.0E-12 | [5..80] | [4..64] |
|
Region A: Residues: [1-125] |
1 11 21 31 41 51
| | | | | |
1 MSGSLSRGNG GKKVLNKNQL LKRNRIRNAR SIRAEAVAAS STKTGTPSDL SESGSKLNVD 60
61 QFISSRQFEV KQLQLAMHNS KAASSTRIFQ ALPRKLRRRT ASHNVRRIPK RMRNRALREM 120
121 RKSDQ
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.409 | 0.232 | ribonuclease P activity | a.1.1 | Globin-like |
| View | Download | 0.608 | 0.195 | ribonuclease P activity | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.500 | 0.056 | ribonuclease P activity | a.118.8 | TPR-like |
| View | Download | 0.377 | 0.012 | ribonuclease P activity | a.24.4 | Hemerythrin |
| View | Download | 0.509 | 0.008 | ribonuclease P activity | a.59.1 | PAH2 domain |
| View | Download | 0.367 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.366 | N/A | N/A | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.366 | N/A | N/A | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.349 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.345 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.323 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.315 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.287 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.267 | N/A | N/A | d.110.4 | SNARE-like |
| View | Download | 0.236 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.221 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.213 | N/A | N/A | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.208 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.208 | N/A | N/A | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.203 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
|
Region A: Residues: [126-353] |
1 11 21 31 41 51
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1 QDVLKGSSAS SRKAHGLNAK QLYKARMSIK LLRLASKSTS MKLSMPPEVT SSNCHVRQKI 60
61 KTLKRMIKES STANPNIKLL NNRMGSYDCT GVNELAPIPK GRVKYTKRQK HFAWLPTHIW 120
121 NAKRSHMMKR WGYQMVWAPT QKCFKLTHRL GGDTCSSDGA LCMDSSYIGT IIVKDKSNDS 180
181 EGDFLKSIIG KLTAERANLR KYREGQVLFQ GLIYSFNEEN GEDSTKPL
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| methyltransferase activity | 1.83230066187063 | bayes_pls_golite062009 |
| transferase activity, transferring one-carbon groups | 1.757479064419 | bayes_pls_golite062009 |
| catalytic activity | 1.52741791343033 | bayes_pls_golite062009 |
| binding | 1.07222887529954 | bayes_pls_golite062009 |
| transferase activity | 0.0529926681035639 | bayes_pls_golite062009 |
|
Region A: Residues: [354-800] |
1 11 21 31 41 51
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1 GPCDVFWVQK DTAIIRLHPS IYTQVFNILL QHKEKLTVQD CRYSLASVTL KGAKALESLA 60
61 SCLRSTEYSK SFEQFKMVSM ITDHNALPQR CTFAFEAIDP RHLAAPKKLN DSQRKTVNSD 120
121 DILSLHENYP QDEINAVFNE LCDPESRTQS YNNQNTLKEI SARRYKLLTA TPNSINKTTV 180
181 PFKESDDPSI PLVIIRRLKT RDWIVVLPWF WLLPLWHLLN RIPRMYHIGL RQFQQIQYEN 240
241 KQLYFPDDYP FTQLGYIENS FYKKEASKTK WDRKPMGKRI NFEKIKDIHN TKLPAYSGEI 300
301 GDFFSSDWRF LQILRNGIDY LQRNDKTLEL MDSKKTGQFN AQGVRDINCV NDVLEFCKDY 360
361 EAKTKAMSLS IEENIPVALC KNRKCQFRTP DSISVNSSSF SLTFFPRCII AVSCTLLERG 420
421 HPKDNARIYQ VPEKDLEHWL QLAKGVY
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [801-875] |
1 11 21 31 41 51
| | | | | |
1 RPNGRKDHDL KIPLPEVHDL IGFITSGTYH LNCGNGMGIG FIDHHAAIRQ PTRYVLIRNV 60
61 GTNTYRLGEW SKISV
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.678 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.626 | a.28.1 | ACP-like |
| View | Download | 0.542 | d.95.2 | Homing endonucleases |
| View | Download | 0.572 | d.58.10 | Acylphosphatase-like |
| View | Download | 0.714 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.530 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.525 | b.3.2 | Carboxypeptidase D, a regulatory domain |
| View | Download | 0.513 | d.58.17 | Metal-binding domain |
| View | Download | 0.497 | b.1.1 | Immunoglobulin |
| View | Download | 0.467 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.465 | d.58.49 | YajQ-like |
| View | Download | 0.442 | d.58.2 | Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |
| View | Download | 0.408 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.404 | d.95.2 | Homing endonucleases |
| View | Download | 0.400 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.384 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.384 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.382 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.382 | a.28.1 | ACP-like |
| View | Download | 0.379 | b.24.1 | Hyaluronate lyase-like, C-terminal domain |
| View | Download | 0.372 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.365 | b.1.1 | Immunoglobulin |
| View | Download | 0.363 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.361 | d.58.48 | MTH1187-like |
| View | Download | 0.359 | d.58.5 | GlnB-like |
| View | Download | 0.356 | d.68.7 | R3H domain |
| View | Download | 0.347 | d.58.17 | Metal-binding domain |
| View | Download | 0.338 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.337 | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.334 | b.48.1 | mu transposase, C-terminal domain |
| View | Download | 0.331 | d.76.1 | GYF domain |
| View | Download | 0.329 | d.68.3 | SirA-like |
| View | Download | 0.316 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.312 | d.12.1 | Ribosomal proteins L23 and L15e |
| View | Download | 0.311 | d.95.2 | Homing endonucleases |
| View | Download | 0.310 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.292 | d.58.48 | MTH1187-like |
| View | Download | 0.291 | b.1.2 | Fibronectin type III |
| View | Download | 0.288 | d.58.35 | Pseudouridine synthase |
| View | Download | 0.284 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.282 | d.58.5 | GlnB-like |
| View | Download | 0.279 | b.1.2 | Fibronectin type III |
| View | Download | 0.278 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.275 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.272 | b.122.1 | PUA domain-like |
| View | Download | 0.270 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.269 | b.7.4 | Rab geranylgeranyltransferase alpha-subunit, insert domain |
| View | Download | 0.258 | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.252 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.245 | b.1.18 | E set domains |
| View | Download | 0.241 | b.1.1 | Immunoglobulin |
| View | Download | 0.240 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.226 | c.51.3 | B12-dependend dehydatases associated subunit |
| View | Download | 0.224 | b.7.3 | PHL pollen allergen |
| View | Download | 0.224 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.221 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.220 | g.10.1 | Hairpin loop containing domain-like |
| View | Download | 0.216 | b.36.1 | PDZ domain-like |
| View | Download | 0.215 | g.3.7 | Scorpion toxin-like |
| View | Download | 0.209 | d.131.1 | DNA clamp |
| View | Download | 0.204 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
