YRC Public Data Repository - Protein Structure Prediction

Protein:	RTT106
Organism:	Saccharomyces cerevisiae
Length:	455 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTT106.

Description	E-value	Query Range	Subject Range
RTT106 - Histone chaperone, involved in regulation of chromatin structure in both transcribed and silenced ch... RT106_YEAST - Histone chaperone RTT106 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTT106 PE=1 SV=... gi\|190409180 - gi\|190409180\|gb\|EDV12445.1\| hypothetical protein SCRG_03332 [Saccharomyces cerevisiae RM11-1a]	0.0	[1..455]	[1..455]
mug183 - histone chaperone Rtt106-like MU183_SCHPO - Meiotically up-regulated gene 183 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...	4.0E-99	[16..374]	[2..352]
SSRP_CHICK, SSRP... - (Q04678) Structure-specific recognition protein 1 (SSRP1) (Recombination signal sequence recognition...	5.0E-91	[61..429]	[148..506]
gi\|123993967, gi... - gi\|123998313\|gb\|ABM86758.1\| structure specific recognition protein 1 [synthetic construct], gi\|12399... SSRP1 - structure specific recognition protein 1	1.0E-88	[61..430]	[186..546]
gi\|8170740 - gi\|8170740\|gb\|AAB19500.2\| HMG1-related DNA-binding protein [Mus sp.] SSRP_MOUSE, SSRP... - (Q08943) Structure-specific recognition protein 1 (SSRP1) (Recombination signal sequence recognition...	2.0E-88	[61..430]	[186..546]
SSRP1_XENLA - FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1	2.0E-82	[61..382]	[186..495]
SSRP1_RAT - FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2	2.0E-81	[61..408]	[38..384]
SSP1A_ORYSJ - FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica GN=SSRP1-A PE=2 SV=1 SSP1A_ORYSA - FACT complex subunit SSRP1-A (Facilitates chromatin transcription complex subunit SSRP1-A) (Recombin...	8.0E-81	[68..414]	[203..541]
SSRP1_CATRO - FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1	5.0E-80	[70..413]	[206..541]
SSRP1_MAIZE - FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1	4.0E-77	[61..415]	[196..543]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLFLDELP ESLSRKIGTV VRVLPSSLEI FEELYKYALN ENSNDRSGRH KKPRIDVSSD  60
   61 LLKTDEISET NTIFKLEGVS VLSPLRKKLD LVFYLSNVDG SPVITLLKGN DRELSIYQLN 120
  121 KNIKMASFLP VPEKPNLIYL FMTYTSCEDN KFSEPVVMTL NKENTLNQFK NLGLLDSNVT 180
  181 DFEKCVEYIR KQAILTGFKI SNPFVNSTLV DTDAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [216-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KINSFHLQCH RGTKEGTLYF LPDHIIFGFK KPILLFDASD IESITYSSIT RLTFNASLVT  60
   61 KDGEKYEFSM IDQTEYAKID DYVKRKQMKD KSMSEELKAK SKSKGQATDG TAD

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.08
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #3

Region A:
Residues: [329-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPSILQEATR QMQDEKKAGV FSDDDEENDQ NFEAESDLSD GSGQESSDGA EDGEEAEEDD  60
   61 EEDDEEEDKK GQSALNRDN

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.08
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #4

Region A:
Residues: [408-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFASINGQPE QELQYKEFKE PLELEDIPIE IDNDDDEDDE DGSGVEYD

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.08
Match:	1l8mA
Description:	No description for 1l8mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits