YRC Public Data Repository - Protein Structure Prediction

Protein:	RTT106
Organism:	Saccharomyces cerevisiae
Length:	455 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTT106.

Description	E-value	Query Range	Subject Range
RTT106 - Histone chaperone, involved in regulation of chromatin structure in both transcribed and silenced ch... RT106_YEAST - Histone chaperone RTT106 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTT106 PE=1 SV=... gi\|190409180 - gi\|190409180\|gb\|EDV12445.1\| hypothetical protein SCRG_03332 [Saccharomyces cerevisiae RM11-1a]	0.0	[1..455]	[1..455]
mug183 - histone chaperone Rtt106-like MU183_SCHPO - Meiotically up-regulated gene 183 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...	4.0E-99	[16..374]	[2..352]
SSRP_CHICK, SSRP... - (Q04678) Structure-specific recognition protein 1 (SSRP1) (Recombination signal sequence recognition...	5.0E-91	[61..429]	[148..506]
gi\|123993967, gi... - gi\|123998313\|gb\|ABM86758.1\| structure specific recognition protein 1 [synthetic construct], gi\|12399... SSRP1 - structure specific recognition protein 1	1.0E-88	[61..430]	[186..546]
gi\|8170740 - gi\|8170740\|gb\|AAB19500.2\| HMG1-related DNA-binding protein [Mus sp.] SSRP_MOUSE, SSRP... - (Q08943) Structure-specific recognition protein 1 (SSRP1) (Recombination signal sequence recognition...	2.0E-88	[61..430]	[186..546]
SSRP1_XENLA - FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1	2.0E-82	[61..382]	[186..495]
SSRP1_RAT - FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2	2.0E-81	[61..408]	[38..384]
SSP1A_ORYSJ - FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica GN=SSRP1-A PE=2 SV=1 SSP1A_ORYSA - FACT complex subunit SSRP1-A (Facilitates chromatin transcription complex subunit SSRP1-A) (Recombin...	8.0E-81	[68..414]	[203..541]
SSRP1_CATRO - FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1	5.0E-80	[70..413]	[206..541]
SSRP1_MAIZE - FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1	4.0E-77	[61..415]	[196..543]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLFLDELP ESLSRKIGTV VRVLPSSLEI FEELYKYALN ENSNDRSGRH KKPRIDVSSD  60
   61 LLKTDEISET NTIFKLEGVS VLSPLRKKLD LVFYLSNVDG SPVITLLKGN DRELSIYQLN 120
  121 KNIKMASFLP VPEKPNLIYL FMTYTSCEDN KFSEPVVMTL NKENTLNQFK NLGLLDSNVT 180
  181 DFEKCVEYIR KQAILTGFKI SNPFVNSTLV DTDAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [216-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KINSFHLQCH RGTKEGTLYF LPDHIIFGFK KPILLFDASD IESITYSSIT RLTFNASLVT  60
   61 KDGEKYEFSM IDQTEYAKID DYVKRKQMKD KSMSEELKAK SKSKGQATDG TAD

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.08
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #3

Region A:
Residues: [329-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPSILQEATR QMQDEKKAGV FSDDDEENDQ NFEAESDLSD GSGQESSDGA EDGEEAEEDD  60
   61 EEDDEEEDKK GQSALNRDN

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.08
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #4

Region A:
Residues: [408-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFASINGQPE QELQYKEFKE PLELEDIPIE IDNDDDEDDE DGSGVEYD

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.08
Match:	1l8mA
Description:	No description for 1l8mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits