| Protein: | UBP10 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 792 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP10.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..770] | [1..770] |
|
|
4.0E-83 | [165..739] | [88..619] |
|
|
8.0E-83 | [166..739] | [89..618] |
|
|
1.0E-81 | [330..733] | [212..588] |
|
|
4.0E-74 | [6..785] | [311..1107] |
|
Region A: Residues: [1-260] |
1 11 21 31 41 51
| | | | | |
1 MTTQESIKPL VDRILSNPLQ FNAAMISNKS NNNDTSAAPE NSSYIVIGKQ HNNNSNSTAI 60
61 AATAESKQIK ENNLIDRPNG KKTNTVPKSM AEALLLYTSK NDKDAADATG AKKSAELSTE 120
121 LSTEPPSSSS EDDKVGKEEE EEGEIFHEAR DYVEPRKASL KERDNADKGD GEDIGEDIGE 180
181 DIGEDIGEDI GEDIGENLGS PLATIDDSSN ENEKEKRKEL STSISSDDEI EDDEDEDDMD 240
241 YDSSAMEKEL PEEEENDSSS
|
| Detection Method: |  |
| Confidence: | 14.16 |
| Match: | 1ldvA |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [261-323] |
1 11 21 31 41 51
| | | | | |
1 KISEGEKKSL YQDLMENSTV EVNRYEPVNN TKENGNRNPK GEEEEEEEED LKHKSRSITP 60
61 PVT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.656 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.436 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.441 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.684 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.375 | a.17.1 | p8-MTCP1 |
| View | Download | 0.368 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.347 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.336 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.312 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.311 | a.3.1 | Cytochrome c |
| View | Download | 0.306 | a.74.1 | Cyclin-like |
| View | Download | 0.291 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.288 | a.112.1 | Description not found. |
| View | Download | 0.241 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.239 | a.49.1 | C-terminal domain of B transposition protein |
| View | Download | 0.212 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.209 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.204 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.202 | a.3.1 | Cytochrome c |
|
Region A: Residues: [324-426] |
1 11 21 31 41 51
| | | | | |
1 ISNLSNFYQF NENINDRGSL NSTRIVKNWG DKFTNLKPRG LLNHGVTCYT NAAVQAMLHI 60
61 PSIQHYLFDI LMGKYDSTIS KNSVSYTLAE TSKKMWLPVS KNP
|
| Detection Method: | |
| Confidence: | 11.136677 |
| Match: | PF00442 |
| Description: | No description for PF00442 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [427-560] |
1 11 21 31 41 51
| | | | | |
1 RKNVSASYIN PKHLISRLDD INCMMSEWQQ EDSHEYFMSL MSRLQEDSVP KGHKLIESII 60
61 YDIFGGLLKQ IVTCKSCGSI SKTEQPFYDL SLHLKGKKKL DPNSDLSSDS INGTSATTST 120
121 TTSNAATKPS LSSS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.416 | 0.322 | protein deubiquitination | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.300 | 0.090 | protein deubiquitination | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.367 | 0.012 | protein deubiquitination | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.363 | N/A | N/A | d.202.1 | Transcription factor NusA, N-terminal domain |
| View | Download | 0.356 | N/A | N/A | d.134.1 | Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 |
| View | Download | 0.299 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.284 | N/A | N/A | d.79.1 | YjgF-like |
| View | Download | 0.273 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.239 | N/A | N/A | d.112.1 | Phoshotransferase/anion transport protein |
| View | Download | 0.225 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.207 | N/A | N/A | c.95.1 | Thiolase-like |
|
Region A: Residues: [561-649] |
1 11 21 31 41 51
| | | | | |
1 SSVNLNNGSP FAAASDLSSA NRRFSIEKSI KDFFNPELIK VDKEQKGYVC EKCHKTTNAV 60
61 KHSSILRAPE TLLVHLKKFR FNGTSSSKM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.307 | b.1.1 | Immunoglobulin |
| View | Download | 0.277 | a.3.1 | Cytochrome c |
| View | Download | 0.366 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.309 | b.1.12 | Purple acid phosphatase, N-terminal domain |
| View | Download | 0.241 | b.2.5 | p53-like transcription factors |
| View | Download | 0.241 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.239 | d.17.4 | NTF2-like |
|
Region A: Residues: [650-792] |
1 11 21 31 41 51
| | | | | |
1 KQAVSYPMFL DLTEYCESKE LPVKYQLLSV VVHEGRSLSS GHYIAHCKQP DGSWATYDDE 60
61 YINIISERDV LKEPNAYYLL YTRLTPKSVP LPLAKSAMAT GNVTSKSKQE QAVNEPNNRP 120
121 LKINSKKNNR KKWKKNKKRK FTK
|
| Detection Method: | |
| Confidence: | 25.522879 |
| Match: | PF00443 |
| Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
