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View Structure Prediction Details

Protein: IPI3
Organism: Saccharomyces cerevisiae
Length: 555 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IPI3.

Description E-value Query
Range
Subject
Range
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
0.0 [2..552] [917..1467]
gi|17225208 - gi|17225208|gb|AAL37300.1|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]
0.0 [18..529] [830..1257]

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Predicted Domain #1
Region A:
Residues: [1-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEQVIFTTN TSGTIASVHS FEQINLRQCS TQSRNSCVQV GNKYLFIAQA QKALINVYNL  60
   61 SGSFKRESVE QRLPLPEILK CLEVVENDGV QYDRIQGVNH NLPDFNLPYL LLGSTESGKL 120
  121 YIWELNSGIL LNVKPMAHYQ SITKIKSILN GKYIITSGND SRVIIWQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.522879
Match: 1erjA_
Description: Tup1, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [168-555]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVDLVSASND DPKPLCILHD HTLPVTDFQV SSSQGKFLSC TDTKLFTVSQ DATIRCYDLS  60
   61 LIGSKKKQKA NENDVSIGKT PVLLATFTTP YSIKSIVLDP ADRACYIGTA EGCFSLNLFY 120
  121 KLKGNAIVNL LQSAGVNTVQ KGRVFSLVQR NSLTGGENED LDALYAMGQL VCENVLNSNV 180
  181 SCLEISMDGT LLLIGDTEGK VSIAEIYSKQ IIRTIQTLTT SQDSVGEVTN LLTNPYRLER 240
  241 GNLLFEGESK GKQPSNNNGH NFMKIPNLQR VIFDGKNKGH LHDIWYQIGE PEAETDPNLA 300
  301 LPLNDFNAYL EQVKTQESIF SHIGKVSSNV KVIDNKIDAT SSLDSNAAKD EEITELKTNI 360
  361 EALTHAYKEL RDMHEKLYEE HQQMLDKQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.221849
Match: 1gg2B_
Description: beta1-subunit of the signal-transducing G protein heterotrimer
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle