| Protein: | SKO1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 647 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKO1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..647] | [1..647] |
|
|
8.0E-59 | [13..562] | [8..553] |
|
|
8.0E-45 | [154..518] | [10..378] |
|
|
2.0E-44 | [1..349] | [665..1019] |
|
|
3.0E-44 | [132..518] | [4..387] |
|
|
2.0E-43 | [25..518] | [17..484] |
|
|
8.0E-43 | [123..487] | [38..392] |
|
|
6.0E-41 | [123..487] | [38..392] |
|
Region A: Residues: [1-129] |
1 11 21 31 41 51
| | | | | |
1 MSSEERSRQP STVSTFDLEP NPFEQSFASS KKALSLPGTI SHPSLPKELS RNNSTSTITQ 60
61 HSQRSTHSLN SIPEENGNST VTDNSNHNDV KKDSPSFLPG QQRPTIISPP ILTPGGSKRL 120
121 PPLLLSPSI
|
| Detection Method: |  |
| Confidence: | 11.55 |
| Match: | 1ei3A |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [130-135] |
1 11 21 31 41 51
| | | | | |
1 LYQANS
|
|
Region B: Residues: [358-430] |
1 11 21 31 41 51
| | | | | |
1 LTTQIENNDQ FNNKTRKRKR RMSSTSSTSK ASRKNSISRK NSAVTTAPAQ KDDVENNKIS 60
61 NNVTLDENEE QER
|
| Detection Method: | |
| Confidence: | 7.75 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [136-208] |
1 11 21 31 41 51
| | | | | |
1 TTNPSQNSHS VSVSNSNPSA IGVSSTSGSL YPNSSSPSGT SLIRQPRNSN VTTSNSGNGF 60
61 PTNDSQMPGF LLN
|
| Detection Method: | |
| Confidence: | 7.75 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [209-287] |
1 11 21 31 41 51
| | | | | |
1 LSKSGLTPNE SNIRTGLTPG ILTQSYNYPV LPSINKNTIT GSKNVNKSVT VNGSIENHPH 60
61 VNIMHPTVNG TPLTPGLSS
|
| Detection Method: | |
| Confidence: | 7.75 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [288-357] |
1 11 21 31 41 51
| | | | | |
1 LLNLPSTGVL ANPVFKSTPT TNTTDGTVNN SISNSNFSPN TSTKAAVKMD NPAEFNAIEH 60
61 SAHNHKENEN
|
| Detection Method: | |
| Confidence: | 7.75 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [431-553] |
1 11 21 31 41 51
| | | | | |
1 KRKEFLERNR VAASKFRKRK KEYIKKIEND LQFYESEYDD LTQVIGKLCG IIPSSSSNSQ 60
61 FNVNVSTPSS SSPPSTSLIA LLESSISRSD YSSAMSVLSN MKQLICETNF YRRGGKNPRD 120
121 DMD
|
| Detection Method: | |
| Confidence: | 21.09691 |
| Match: | 1dh3A_ |
| Description: | Transcription factor Creb |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [554-647] |
1 11 21 31 41 51
| | | | | |
1 GQEDSFNKDT NVVKSENAGY PSVNSRPIIL DKKYSLNSGA NISKSNTTTN NVGNSAQNII 60
61 NSCYSVTNPL VINANSDTHD TNKHDVLSTL PHNN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.435 | a.77.1 | DEATH domain |
| View | Download | 0.470 | c.30.1 | PreATP-grasp domain |
| View | Download | 0.420 | c.10.2 | L domain-like |
| View | Download | 0.572 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.417 | c.52.3 | Eukaryotic RPB5 N-terminal domain |
| View | Download | 0.391 | d.26.1 | FKBP-like |
| View | Download | 0.387 | a.77.1 | DEATH domain |
| View | Download | 0.379 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.376 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.350 | b.55.1 | PH domain-like |
| View | Download | 0.306 | d.42.1 | POZ domain |
| View | Download | 0.292 | c.53.1 | Resolvase-like |
| View | Download | 0.285 | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.281 | a.118.1 | ARM repeat |
| View | Download | 0.275 | c.30.1 | PreATP-grasp domain |
| View | Download | 0.266 | a.3.1 | Cytochrome c |
| View | Download | 0.255 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.250 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.241 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.241 | a.101.1 | Uteroglobin-like |
| View | Download | 0.235 | d.70.1 | Yest killer toxins |
| View | Download | 0.231 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.229 | d.58.25 | Killer toxin KP6 alpha-subunit |
| View | Download | 0.223 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.217 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.206 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.204 | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| View | Download | 0.201 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.201 | d.79.1 | YjgF-like |
