| Protein: | THO2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1597 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for THO2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [126..1514] | [107..1583] |
|
|
0.0 | [1..1597] | [1..1597] |
|
|
0.0 | [126..1514] | [102..1578] |
|
|
0.0 | [717..1279] | [1..650] |
|
|
2.0E-94 | [923..1579] | [1..718] |
|
|
3.0E-50 | [1084..1501] | [50..479] |
|
Region A: Residues: [1-1111] |
1 11 21 31 41 51
| | | | | |
1 MAEQTLLSKL NALSQKVIPP ASPSQASILT EEVIRNWPER SKTLCSDFTA LESNDEKEDW 60
61 LRTLFIELFD FINKNDENSP LKLSDVASFT NELVNHERQV SQASIVGKMF IAVSSTVPNI 120
121 NDLTTISLCK LIPSLHEELF KFSWISSKLL NKEQTTLLRH LLKKSKYELK KYNLLVENSV 180
181 GYGQLVALLI LAYYDPDNFS KVSAYLKEIY HIMGKYSLDS IRTLDVILNV SSQFITEGYK 240
241 FFIALLRKSD SWPSSHVANN SNYSSLNEGG NMIAANIISF NLSQYNEEVD KENYERYMDM 300
301 CCILLKNGFV NFYSIWDNVK PEMEFLQEYI QNLETELEEE STKGVENPLA MAAALSTENE 360
361 TDEDNALVVN DDVNMKDKIS EETNADIESK GKQKTQQDIL LFGKIKLLER LLIHGCVIPV 420
421 IHVLKQYPKV LYVSESLSRY LGRVFEYLLN PLYTSMTSSG ESKDMATALM ITRIDNGILA 480
481 HKPRLIHKYK THEPFESLEL NSSYVFYYSE WNSNLTPFAS VNDLFENSHI YLSIIGPYLG 540
541 RIPTLLSKIS RIGVADIQKN HGSESLHVTI DKWIDYVRKF IFPATSLLQN NPIATSEVYE 600
601 LMKFFPFEKR YFIYNEMMTK LSQDILPLKV SFNKAEREAK SILKALSIDT IAKESRRFAK 660
661 LISTNPLASL VPAVKQIENY DKVSELVVYT TKYFNDFAYD VLQFVLLLRL TYNRPAVQFD 720
721 GVNQAMWVQR LSIFIAGLAK NCPNMDISNI ITYILKTLHN GNIIAVSILK ELIITVGGIR 780
781 DLNEVNMKQL LMLNSGSPLK QYARHLIYDF RDDNSVISSR LTSFFTDQSA ISEIILLLYT 840
841 LNLKANTQNS HYKILSTRCD EMNTLLWSFI ELIKHCLKGK AFEENVLPFV ELNNRFHLST 900
901 PWTFHIWRDY LDNQLNSNEN FSIDELIEGA EFSDVDLTKI SKDLFTTFWR LSLYDIHFDK 960
961 SLYDERKNAL SGENTGHMSN RKKHLIQNQI KDILVTGISH QRAFKKTSEF ISEKSNVWNK1020
1021 DCGEDQIKIF LQNCVVPRVL FSPSDALFSS FFIFMAFRTE NLMSILNTCI TSNILKTLLF1080
1081 CCTSSEAGNL GLFFTDVLKK LEKMRLNGDF N
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1112-1489] |
1 11 21 31 41 51
| | | | | |
1 DQASRKLYEW HSVITEQVID LLSEKNYMSI RNGIEFMKHV TSVFPVVKAH IQLVYTTLEE 60
61 NLINEEREDI KLPSSALIGH LKARLKDALE LDEFCTLTEE EAEQKRIREM ELEEIKNYET 120
121 ACQNEQKQVA LRKQLELNKS QRLQNDPPKS VASGSAGLNS KDRYTYSRNE PVIPTKPSSS 180
181 QWSYSKVTRH VDDINHYLAT NHLQKAISLV ENDDETRNLR KLSKQNMPIF DFRNSTLEIF 240
241 ERYFRTLIQN PQNPDFAEKI DSLKRYIKNI SREPYPDTTS SYSEAAAPEY TKRSSRYSGN 300
301 AGGKDGYGSS NYRGPSNDRS APKNIKPISS YAHKRSELPT RPSKSKTYND RSRALRPTGP 360
361 DRGDGFDQRD NRLREEYK
|
| Detection Method: | |
| Confidence: | 22.39794 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1490-1597] |
1 11 21 31 41 51
| | | | | |
1 KNSSQRSQLR FPEKPFQEGK DSSKANPYQA SSYKRDSPSE NEEKPNKRFK KDETIRNKFQ 60
61 TQDYRNTRDS GAAHRANENQ RYNGNRKSNT QALPQGPKGG NYVSRYQR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [515-743] |
1 11 21 31 41 51
| | | | | |
1 LTPFASVNDL FENSHIYLSI IGPYLGRIPT LLSKISRIGV ADIQKNHGSE SLHVTIDKWI 60
61 DYVRKFIFPA TSLLQNNPIA TSEVYELMKF FPFEKRYFIY NEMMTKLSQD ILPLKVSFNK 120
121 AEREAKSILK ALSIDTIAKE SRRFAKLIST NPLASLVPAV KQIENYDKVS ELVVYTTKYF 180
181 NDFAYDVLQF VLLLRLTYNR PAVQFDGVNQ AMWVQRLSIF IAGLAKNCP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [744-958] |
1 11 21 31 41 51
| | | | | |
1 NMDISNIITY ILKTLHNGNI IAVSILKELI ITVGGIRDLN EVNMKQLLML NSGSPLKQYA 60
61 RHLIYDFRDD NSVISSRLTS FFTDQSAISE IILLLYTLNL KANTQNSHYK ILSTRCDEMN 120
121 TLLWSFIELI KHCLKGKAFE ENVLPFVELN NRFHLSTPWT FHIWRDYLDN QLNSNENFSI 180
181 DELIEGAEFS DVDLTKISKD LFTTFWRLSL YDIHF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [959-1087] |
1 11 21 31 41 51
| | | | | |
1 DKSLYDERKN ALSGENTGHM SNRKKHLIQN QIKDILVTGI SHQRAFKKTS EFISEKSNVW 60
61 NKDCGEDQIK IFLQNCVVPR VLFSPSDALF SSFFIFMAFR TENLMSILNT CITSNILKTL 120
121 LFCCTSSEA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1088-1514] |
1 11 21 31 41 51
| | | | | |
1 GNLGLFFTDV LKKLEKMRLN GDFNDQASRK LYEWHSVITE QVIDLLSEKN YMSIRNGIEF 60
61 MKHVTSVFPV VKAHIQLVYT TLEENLINEE REDIKLPSSA LIGHLKARLK DALELDEFCT 120
121 LTEEEAEQKR IREMELEEIK NYETACQNEQ KQVALRKQLE LNKSQRLQND PPKSVASGSA 180
181 GLNSKDRYTY SRNEPVIPTK PSSSQWSYSK VTRHVDDINH YLATNHLQKA ISLVENDDET 240
241 RNLRKLSKQN MPIFDFRNST LEIFERYFRT LIQNPQNPDF AEKIDSLKRY IKNISREPYP 300
301 DTTSSYSEAA APEYTKRSSR YSGNAGGKDG YGSSNYRGPS NDRSAPKNIK PISSYAHKRS 360
361 ELPTRPSKSK TYNDRSRALR PTGPDRGDGF DQRDNRLREE YKKNSSQRSQ LRFPEKPFQE 420
421 GKDSSKA
|
| Detection Method: | |
| Confidence: | 23.0 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1515-1597] |
1 11 21 31 41 51
| | | | | |
1 NPYQASSYKR DSPSENEEKP NKRFKKDETI RNKFQTQDYR NTRDSGAAHR ANENQRYNGN 60
61 RKSNTQALPQ GPKGGNYVSR YQR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
