Protein: | DBP2 |
Organism: | Saccharomyces cerevisiae |
Length: | 546 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DBP2.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..546] | [1..546] |
|
0.0 | [32..545] | [3..524] |
|
0.0 | [24..545] | [7..520] |
|
0.0 | [39..545] | [2..500] |
|
0.0 | [3..495] | [12..504] |
|
0.0 | [3..495] | [12..504] |
|
0.0 | [21..545] | [3..525] |
|
0.0 | [2..531] | [72..611] |
|
0.0 | [5..495] | [27..518] |
Region A: Residues: [1-80] |
1 11 21 31 41 51 | | | | | | 1 MTYGGRDQQY NKTNYKSRGG DFRGGRNSDR NSYNDRPQGG NYRGGFGGRS NYNQPQELIK 60 61 PNWDEELPKL PTFEKNFYVE |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.589 | b.71.1 | Glycosyl hydrolase domain |
View | Download | 0.589 | b.71.1 | Glycosyl hydrolase domain |
View | Download | 0.424 | b.71.1 | Glycosyl hydrolase domain |
Region A: Residues: [81-327] |
1 11 21 31 41 51 | | | | | | 1 HESVRDRSDS EIAQFRKENE MTISGHDIPK PITTFDEAGF PDYVLNEVKA EGFDKPTGIQ 60 61 CQGWPMALSG RDMVGIAATG SGKTLSYCLP GIVHINAQPL LAPGDGPIVL VLAPTRELAV 120 121 QIQTECSKFG HSSRIRNTCV YGGVPKSQQI RDLSRGSEIV IATPGRLIDM LEIGKTNLKR 180 181 VTYLVLDEAD RMLDMGFEPQ IRKIVDQIRP DRQTLMWSAT WPKEVKQLAA DYLNDPIQVQ 240 241 VGSLELS |
Detection Method: | ![]() |
Confidence: | 730.0103 |
Match: | 1hv8A_ |
Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [328-546] |
1 11 21 31 41 51 | | | | | | 1 ASHNITQIVE VVSDFEKRDR LNKYLETASQ DNEYKTLIFA STKRMCDDIT KYLREDGWPA 60 61 LAIHGDKDQR ERDWVLQEFR NGRSPIMVAT DVAARGIDVK GINYVINYDM PGNIEDYVHR 120 121 IGRTGRAGAT GTAISFFTEQ NKGLGAKLIS IMREANQNIP PELLKYDRRS YGGGHPRYGG 180 181 GRGGRGGYGR RGGYGGGRGG YGGNRQRDGG WGNRGRSNY |
Detection Method: | ![]() |
Confidence: | 730.0103 |
Match: | 1hv8A_ |
Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB):![]() |