YRC Public Data Repository - Protein Structure Prediction

Protein:	YAF9
Organism:	Saccharomyces cerevisiae
Length:	226 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAF9.

Description	E-value	Query Range	Subject Range
gi\|151944428 - gi\|151944428\|gb\|EDN62706.1\| conserved protein [Saccharomyces cerevisiae YJM789] YAF9 - Subunit of both the NuA4 histone H4 acetyltransferase complex and the SWR1 complex, may function to ... gi\|207341734 - gi\|207341734\|gb\|EDZ69709.1\| YNL107Wp-like protein [Saccharomyces cerevisiae AWRI1631] AF9_YEAST - Protein AF-9 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAF9 PE=1 SV=1	1.0E-84	[1..226]	[1..226]
SPAC17G8.07 - YEATS family protein AF9_SCHPO - Protein AF-9 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yaf9 PE=3 SV=1	2.0E-67	[1..222]	[1..212]
gi\|9755857 - gi\|9755857\|emb\|CAC01935.1\| NuBI-1 protein [Homo sapiens]	3.0E-66	[3..224]	[6..205]
ENSOCUP000000099... - pep:novel chromosome:oryCun2:4:48350422:48426536:1 gene:ENSOCUG00000011552 transcript:ENSOCUT0000001... YETS4_MOUSE - YEATS domain-containing protein 4 OS=Mus musculus GN=Yeats4 PE=2 SV=1	3.0E-65	[3..224]	[10..209]
gi\|18419436, gi\|... - gi\|18419436\|gb\|AAL69326.1\|AF410481_1 GAS41 [Gallus gallus], gi\|118405208\|ref\|NP_001072971.1\| YEATS d...	1.0E-64	[3..224]	[10..209]
Gas41-PA - The gene Gas41 is referred to in FlyBase by the symbol Dmel\Gas41 (CG9207, FBgn0031873). It is a pro... gi\|220942696, gi... - gi\|220960304\|gb\|ACL92688.1\| Gas41-PA [synthetic construct], gi\|220942696\|gb\|ACL83891.1\| Gas41-PA [sy...	5.0E-62	[4..223]	[7..212]
TA14B_ARATH - Transcription initiation factor TFIID subunit 14b OS=Arabidopsis thaliana GN=TAF14B PE=1 SV=1	1.0E-60	[7..220]	[37..258]
gfl-1 - Human AF-9 protein like status:Partially_confirmed UniProt:Q21501 protein_id:CAB01234.1	8.0E-55	[4..216]	[3..195]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTISKRIK TLSVSRPIIY GNTAKKMGSV KPPNAPAEHT HLWTIFVRGP QNEDISYFIK  60
   61 KVVFKLHDTY PNPVRSIEAP PFELTETGWG EFDINIKVYF VEEANEKVLN FYHRLRLHPY 120
  121 ANP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	66.920819
Match:	PF03366
Description:	YEATS family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPNSDNGNEQ NTTDHNSKDA EVSSVYFDEI VFNEPNEEFF KILMSRPGNL LPSNKTDDCV  60
   61 YSKQLEQEEI DRIEIGIEKV DKEIDELKQK LENLVKQEAI NGS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits