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View Structure Prediction Details

Protein: TPM1
Organism: Saccharomyces cerevisiae
Length: 199 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPM1.

Description E-value Query
Range		 Subject
Range
gi|37403, gi|224906 - gi|37403|emb|CAA27243.1| unnamed protein product [Homo sapiens], gi|224906|prf||1203383A gene oncD
 2.0E-48 [1..197] [7..204]
gi|3668187 - gi|3668187|dbj|BAA33452.1| myosin heavy chain [Theragra chalcogramma]
 6.0E-46 [3..199] [916..1113]
gi|14250231, gi|... - ref|NP_659210.1| myosin, heavy polypeptide 2, skeletal muscle, adult [Mus musculus], gi|14250231|gb...
 3.0E-35 [3..199] [921..1118]
MYH7_RABIT - Myosin-7 (Fragment) OS=Oryctolagus cuniculus GN=MYH7 PE=1 SV=1
 2.0E-34 [3..199] [478..675]
gi|12657350 - gi|12657350|emb|CAC27776.1| myosin heavy chain [Notothenia coriiceps]
 2.0E-33 [3..199] [908..1105]
MYSS_CYPCA - Myosin heavy chain, fast skeletal muscle OS=Cyprinus carpio PE=2 SV=2
 3.0E-33 [3..199] [915..1112]
gi|7209643 - gi|7209643|dbj|BAA92289.1| myosin heavy chain [Seriola dumerili]
 1.0E-32 [3..199] [918..1115]
gi|9971579 - gi|9971579|dbj|BAB12571.1| myosin heavy chain [Pennahia argentata]
 3.0E-32 [3..199] [909..1106]

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Predicted Domain #1
Region A:
Residues: [1-91] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKIREKLSN LKLEAESWQE KYEELKEKNK DLEQENVEKE NQIKSLTVKN QQLEDEIEKL  60
   61 EAGLSDSKQT EQDNVEKENQ IKSLTVKNHQ L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.522879
Match: 2tmaA_
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [92-199] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEEIEKLEAE LAESKQLSED SHHLQSNNDN FSKKNQQLEE DLEESDTKLK ETTEKLRESD  60
   61 LKADQLERRV AALEEQREEW ERKNEELTVK YEDAKKELDE IAASLENL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.522879
Match: 2tmaA_
Description: Tropomyosin
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle