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View Structure Prediction Details

Protein: RPL16B
Organism: Saccharomyces cerevisiae
Length: 198 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL16B.

Description E-value Query
Range		 Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 2.0E-69 [2..198] [2..200]
gi|190689373, gi... - gi|190690735|gb|ACE87142.1| ribosomal protein L13a protein [synthetic construct], gi|190689373|gb|AC...
RPL13A - ribosomal protein L13a
gi|114678455, gi... - gi|55628330|ref|XP_527683.1| PREDICTED: similar to ribosomal protein L13a; 60S ribosomal protein L13...
 8.0E-69 [4..197] [5..200]
RL13A_MOUSE - 60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4
gi|55715983 - gb|AAH86250.1| Unknown (protein for MGC:98767) [Xenopus laevis]
 5.0E-67 [2..197] [3..200]
RL13A_RAT - 60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2
 5.0E-67 [2..197] [3..200]
RL13A_PICMA - 60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1
 2.0E-60 [6..198] [12..206]
gi|15293895 - gi|15293895|gb|AAK95140.1| ribosomal protein L13a [Ictalurus punctatus]
 2.0E-60 [2..197] [1..198]
RL16B_SCHPO - 60S ribosomal protein L16-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1601 PE=1 S...
rpl1601 - 60S ribosomal protein L13 /L16
 6.0E-60 [2..198] [4..197]
RL13A_SALTR - 60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1
 7.0E-60 [14..197] [1..186]
R13A3_ARATH - 60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1
 8.0E-60 [4..186] [10..192]

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Predicted Domain #1
Region A:
Residues: [1-198] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPVVVIDA KDHLLGRLAS TIAKQVLNGQ KIVVVRAEAL NISGEFFRNK LKYHDFLRKA  60
   61 TAFNKTRGPF HFRAPSRILY KAIRGMVSHK TARGKAALER LKIFEGIPPP YDKKKRVVVP 120
  121 QALRVLRLKP GRKYTTLGKL STSVGWKYED VVAKLEDKRK VRSAEYYAKK RAFTKKVSSA 180
  181 SAAASESDVA KQLASFGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 716.54902
Match: 1k5yM_
Description: No description for 1k5yM_ was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle