| Protein: | COG6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 839 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COG6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..839] | [1..839] |
|
|
0.0 | [131..749] | [20..593] |
|
|
0.0 | [161..749] | [1..545] |
|
|
0.0 | [140..723] | [12..528] |
|
|
0.0 | [139..627] | [17..486] |
|
|
0.0 | [142..674] | [14..496] |
|
Region A: Residues: [1-119] |
1 11 21 31 41 51
| | | | | |
1 MDFVVDYQTY AMADTATPEL PEPEPRLNLT SDAQSQPTGK LDLQFKLPDL QRYSNNNATL 60
61 PVDNDGAGSK DLHKKMTHYA MSSIDKIQLS NPSKQLGQNS QDEKLSQQES QNFTNYEPK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [120-511] |
1 11 21 31 41 51
| | | | | |
1 NLDLSKLVSP SSGSNKNTTN LVLSNKLSKI LNNYTLINYQ ATVQLRKSLK VLEENKERLS 60
61 LDEQKLMNPE YVGTLARRAL RTDLESQLLK EHITVLEEFK PIIRRIKRLS SSVEKIQRTS 120
121 EKLLSNETNE VPTNNVVLQE IDQYRLKAEQ LKLKKKILLS IRDRFTLNQV EDDVITNGTI 180
181 DNIFFEVVKK VINIKDESSF LLTLPNLNAG NALIMGVNEI LEKTNKKIFN YLIDFLYSFE 240
241 SSSNLLNDHG TTEQESLNIF RKSLVFLSSD LELFNELLKR VTTLRSKSIL DEFLSQFDMN 300
301 STTSKPIILS AHDPIRYIGD VLASVHSIIA NEADFVKSLF DFQDEDLKDT PISILQQNKT 360
361 FLKGIDNKLL NDIIQSLSNS CRIRIEQIVR FE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [512-606] |
1 11 21 31 41 51
| | | | | |
1 ENPIINFEIV RLLKLYRVMF ERKGIQDDSS IINNLKSLED ISKNRIIGYY EDYMKQTVMA 60
61 ETKNSSDDLL PPEWLSEYMN KLVELFEIYE KTHAA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.876 | 0.010 | intra-Golgi vesicle-mediated transport | a.7.6 | Ribosomal protein S20 |
|
Region A: Residues: [607-839] |
1 11 21 31 41 51
| | | | | |
1 EDEESEDNKL LSSKNLQTIV EQPIKDVLLK QLQTSFPLAK KNEKEKASLL TIEINCFDLI 60
61 KSRLQPFEGL FAQDDDSRKI TIWVCDKLKE YTKQMLTLQI KFLFENTGLD LYSNLVNMIF 120
121 PVDSVKDELD YDMYLALRDN SLMELDMVRK NVHDKLNYYL PQALTDVQGN LLFKLTSPMI 180
181 ADEICDECFK KLSLFYNIFR KLLIHLYPNK KDQVFEILNF STDEFDMLIG IDH
|
| Detection Method: | |
| Confidence: | 9.12 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
Matching Structure (courtesy of the PDB): |
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