| Protein: | HDA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 706 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDA1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..706] | [1..706] |
|
|
0.0 | [12..696] | [23..676] |
|
|
0.0 | [12..697] | [33..730] |
|
|
0.0 | [3..535] | [63..610] |
|
|
0.0 | [3..519] | [274..770] |
|
|
0.0 | [3..519] | [271..767] |
|
|
0.0 | [65..450] | [10..389] |
|
Region A: Residues: [1-236] |
1 11 21 31 41 51
| | | | | |
1 MDSVMVKKEV LENPDHDLKR KLEENKEEEN SLSTTSKSKR QVIVPVCMPK IHYSPLKTGL 60
61 CYDVRMRYHA KIFTSYFEYI DPHPEDPRRI YRIYKILAEN GLINDPTLSG VDDLGDLMLK 120
121 IPVRAATSEE ILEVHTKEHL EFIESTEKMS REELLKETEK GDSVYFNNDS YASARLPCGG 180
181 AIEACKAVVE GRVKNSLAVV RPPGHHAEPQ AAGGFCLFSN VAVAAKNILK NYPESV
|
| Detection Method: |  |
| Confidence: | 288.522879 |
| Match: | 1c3pA_ |
| Description: | HDAC homologue |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [237-436] |
1 11 21 31 41 51
| | | | | |
1 RRIMILDWDI HHGNGTQKSF YQDDQVLYVS LHRFEMGKYY PGTIQGQYDQ TGEGKGEGFN 60
61 CNITWPVGGV GDAEYMWAFE QVVMPMGREF KPDLVIISSG FDAADGDTIG QCHVTPSCYG 120
121 HMTHMLKSLA RGNLCVVLEG GYNLDAIARS ALSVAKVLIG EPPDELPDPL SDPKPEVIEM 180
181 IDKVIRLQSK YWNCFRRRHA
|
| Detection Method: | |
| Confidence: | 288.522879 |
| Match: | 1c3pA_ |
| Description: | HDAC homologue |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [437-706] |
1 11 21 31 41 51
| | | | | |
1 NSGCNFNEPI NDSIISKNFP LQKAIRQQQQ HYLSDEFNFV TLPLVSMDLP DNTVLCTPNI 60
61 SESNTIIIVV HDTSDIWAKR NVISGTIDLS SSVIIDNSLD FIKWGLDRKY GIIDVNIPLT 120
121 LFEPDNYSGM ITSQEVLIYL WDNYIKYFPS VAKIAFIGIG DSYSGIVHLL GHRDTRAVTK 180
181 TVINFLGDKQ LKPLVPLVDE TLSEWYFKNS LIFSNNSHQC WKENESRKPR KKFGRVLRCD 240
241 TDGLNNIIEE RFEEATDFIL DSFEEWSDEE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
