| Protein: | HEF3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1044 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HEF3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1044] | [1..1044] |
|
|
0.0 | [1..1044] | [1..1045] |
|
|
0.0 | [2..1044] | [5..1050] |
|
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0.0 | [2..1044] | [5..1049] |
|
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0.0 | [2..1042] | [5..1046] |
|
|
0.0 | [1..1043] | [1..1042] |
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|
0.0 | [18..1042] | [21..1054] |
|
Region A: Residues: [1-321] |
1 11 21 31 41 51
| | | | | |
1 MSDSQQSITV LEELFRKLET ATSETREGIS SELSSFLNGN IIEHDVPEVF FDEFQKAIQS 60
61 KQKALNTLGA VAYIANETNL SPSVEPYIVA TVPSVCSKAG SKDNDVQLAA TKALKAIASA 120
121 VNPVAVKALL PHLIHSLETS NKWKEKVAVL EVISVLVDAA KEQIALRMPE LIPVLSESMW 180
181 DTKKGVKEAA TTTITKATET VDNKDIERFI PKLIECIANP NEVPETVHLL GATTFVAEVT 240
241 PATLSIMVPL LSRGLAERET SIKRKAAVII DNMCKLVEDP QVVAPFLGKL LPGLKNNFAT 300
301 IADPEAREVT LKALKTLRRV G
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [322-418] |
1 11 21 31 41 51
| | | | | |
1 NVGEDDVLPE ISHAGDVSTT LGVIKELLEP EKVAPRFTIV VEYIAAIAAN LIDERIIDQQ 60
61 TWFTHVTPYM TIFLHEKTAK EILDDFRKRA VDNIPVG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.942 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
|
Region A: Residues: [419-645] |
1 11 21 31 41 51
| | | | | |
1 PNFQDEEDEG EDLCNCEFSL AYGAKILLNK TQLRLKRGRR YGLCGPNGAG KSTLMRSIAN 60
61 GQVDGFPTQD ECRTVYVEHD IDNTHSDMSV LDFVYSGNVG TKDVITSKLK EFGFSDEMIE 120
121 MPIASLSGGW KMKLALARAV LKDADILLLD EPTNHLDTVN VEWLVNYLNT CGITSVIVSH 180
181 DSGFLDKVCQ YIIHYEGLKL RKYKGNLSEF VQKCPTAQSY YELGASD
|
| Detection Method: | |
| Confidence: | 93.383689 |
| Match: | 1b0uA_ |
| Description: | ATP-binding subunit of the histidine permease |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [646-1044] |
1 11 21 31 41 51
| | | | | |
1 LEFQFPTPGY LEGVKTKQKA IVKVSNMTFQ YPGTTKPQVS DVTFQCSLSS RIAVIGPNGA 60
61 GKSTLINVLT GELLPTSGEV YTHENCRIAY IKQHAFAHIE SHLDKTPSEY IQWRFQTGED 120
121 RETMDRANRQ INENDAEAMN KIFKIEGTPR RVAGIHSRRK FKNTYEYECS FLLGENIGMK 180
181 SERWVPMMSV DNAWLPRGEL IESHSKMVAE IDMKEALASG QFRALTRKEI ELHCAMLGLD 240
241 SELVSHSRIR GLSGGQKVKL VLAACTWQRP HLIVLDEPTN YLDRDSLGAL SKALKAFEGG 300
301 VIIITHSAEF TKNLTDEVWA VKDGKMTPSG HNWVAGQGAG PRIEKKEEEG DKFDAMGNKI 360
361 NSGKKKSKLS SAELRKKKKE RMKKKKEMGD EYVSSDEDF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
