YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: LIP1
Organism: Saccharomyces cerevisiae
Length: 150 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LIP1.

Description E-value Query
Range
Subject
Range
LIP1_CANGA - Ceramide synthase subunit LIP1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 062...
LIP1_CANGA - Ceramide synthase subunit LIP1 OS=Candida glabrata GN=LIP1 PE=3 SV=1
237.0 [0..16] [149..7]
LIP1_KLULA - Ceramide synthase subunit LIP1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NB...
LIP1_KLULA - Ceramide synthase subunit LIP1 OS=Kluyveromyces lactis GN=LIP1 PE=3 SV=1
162.0 [0..17] [150..7]
LIP1_ASHGO - Ceramide synthase subunit LIP1 OS=Ashbya gossypii GN=LIP1 PE=3 SV=1
LIP1_ASHGO - Ceramide synthase subunit LIP1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL...
117.0 [0..31] [150..17]

Back

Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPTPIITT KSAAKPKPKI FNLFRVCFIS LLLIAAVEYF KYGTRINYEW FHCTPIKEPQ  60
   61 SGSVIKLWAR GGPSCDKRGE YKTIVKRITR DYEPNDEHLS FCIIENDNVP PVHYPIHEDK 120
  121 GEPGYVAYVG YDTDSELVQE LCADSTIYHM 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle