| Protein: | YMR259C |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1420 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR259C.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [73..1420] | [1..1348] |
|
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0.0 | [114..992] | [102..1036] |
|
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0.0 | [117..985] | [413..1452] |
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0.0 | [313..856] | [153..672] |
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0.0 | [596..1028] | [257..665] |
|
Region A: Residues: [1-162] |
1 11 21 31 41 51
| | | | | |
1 MTTDVQFSSQ EIELFRVKEF LIANNPAKIN NENKDAVLTQ IEHDFRYLIQ YIKDGLPNLN 60
61 ESTRLIFPDT FSICLLRSHQ IIASKKIDSQ EFLSAVKEQL LTEANANIIF EYVLDFWADG 120
121 GAPLMNALRD LFSKLLNLLK ITYPMSTLKD VLFNWMNEIL EV
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| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [163-304] |
1 11 21 31 41 51
| | | | | |
1 PSTLRVQYYL IDALSSDFDL YYIIEKKPHF IDNSFSLMNS DLLANSVGKC IVSLLLNIYE 60
61 KHFKKNESFV QEWIQLWKSC ALKYIHDKQY TKSINLYIMI PLFKNMPNSA FTLFLECMSN 120
121 KDPSLLLSLL KIGQELGIEE EP
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.465 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.718 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.347 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.347 | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.718 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.567 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.465 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.347 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.347 | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.346 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.311 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.281 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.278 | a.26.1 | 4-helical cytokines |
| View | Download | 0.273 | a.149.1 | RNase III endonuclease catalytic domain |
| View | Download | 0.269 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.267 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.264 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.260 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.252 | a.182.1 | GatB/YqeY domain |
| View | Download | 0.249 | d.162.1 | LDH C-terminal domain-like |
| View | Download | 0.245 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.244 | a.129.1 | GroEL equatorial domain-like |
| View | Download | 0.238 | a.118.1 | ARM repeat |
| View | Download | 0.235 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.234 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.233 | d.90.1 | NADH oxidase/flavin reductase |
| View | Download | 0.229 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.229 | a.118.8 | TPR-like |
| View | Download | 0.222 | c.16.1 | Lumazine synthase |
| View | Download | 0.213 | d.44.1 | Fe,Mn superoxide dismutase (SOD), C-terminal domain |
| View | Download | 0.207 | a.63.1 | Apolipophorin-III |
| View | Download | 0.207 | d.13.1 | HIT-like |
| View | Download | 0.204 | a.118.8 | TPR-like |
| View | Download | 0.201 | d.86.1 | Translation initiation factor eIF4e |
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Region A: Residues: [305-889] |
1 11 21 31 41 51
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1 FCDNKYTTVD SVNKLIEQDE YKLQVFEILT FSTKKSKPIR PFVFKTIKQY LYVFFVDTEL 60
61 ERRNYFCSSM KHFIFRTRDC AYSLARDARK LKKAEKFPDE QREKLAQVEE ARAFLVWLCN 120
121 FIKYNLAPGT LYQANVTSLK LMHILIKSGV DKSTPQKFLD NQNKREYPFS IPILQDVTFL 180
181 RLLIDLLVSN YADVRELSKE MLFIMISADE SRGLFLDTLD ANALKWTATS LLSDYEKGDA 240
241 GATVYEFIFT VMGSQRSFID QTIDILAQMV QNLQNDSIGC AENSIGPHFA ALSLILNKFN 300
301 SEENHQDTSK IISKLINLVL KSWEATRNVV CHDSAHGILP EKYANCGVPD QVIISHAFRA 360
361 IKEASYLLET ILKKYPLTRD QLDSIGDLFI VQLSTIRHSG AFQAVLPGLK AFCIRCQLEF 420
421 PAILEELLSK SVKSLKSKTQ HITRRSGGLP FLVTTVLSAE VTKGRPLLQK TFENLLLVAR 480
481 LPIPPHQDEF DLPQVNAINC INAIFVEPKL SVHCTSFVSE ALELALLNFD CDIWALRNCS 540
541 IMLFTSLQNR IFGKVGRSVS AKLFFTKYSG LRQLLLNILN SSIAQ
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [890-1031] |
1 11 21 31 41 51
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1 YSGSERKSYQ IESIFLVLNV LLRLRPTAGY TGLKEFNVSV YECLSNENWK IRDMASRVLH 60
61 MLSENFEEEI RKLLDLASIA KQNQLHGHLL ALQQLVPQYL SGTRDMELIQ RILEKKRMLL 120
121 LENKCFITKK AYLKLTCCIL ET
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.649 | 0.568 | cytoplasm | a.1.1 | Globin-like |
| View | Download | 0.739 | 0.141 | cytoplasm | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.718 | 0.136 | cytoplasm | a.118.8 | TPR-like |
| View | Download | 0.660 | 0.018 | cytoplasm | e.22.1 | Dehydroquinate synthase-like |
| View | Download | 0.570 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.566 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.546 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.540 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.533 | N/A | N/A | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.507 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.477 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.469 | N/A | N/A | a.79.1 | Antitermination factor NusB |
| View | Download | 0.457 | N/A | N/A | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.456 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.452 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.444 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.444 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.422 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.417 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.415 | N/A | N/A | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.412 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.409 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.398 | N/A | N/A | a.7.7 | BAG domain |
| View | Download | 0.385 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.381 | N/A | N/A | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.378 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.377 | N/A | N/A | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.377 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.373 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.357 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.353 | N/A | N/A | b.82.2 | Clavaminate synthase-like |
| View | Download | 0.349 | N/A | N/A | a.146.1 | Telomeric repeat binding factor (TRF) dimerisation domain |
| View | Download | 0.326 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.323 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.323 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.314 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.297 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.293 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.289 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.286 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.286 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.285 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.283 | N/A | N/A | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.283 | N/A | N/A | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.283 | N/A | N/A | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.281 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.280 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.280 | N/A | N/A | d.134.1 | Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 |
| View | Download | 0.278 | N/A | N/A | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.276 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.267 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.265 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.263 | N/A | N/A | a.23.3 | Methane monooxygenase hydrolase, gamma subunit |
| View | Download | 0.260 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.257 | N/A | N/A | a.99.1 | Cryptochrome/photolyase FAD-binding domain |
| View | Download | 0.253 | N/A | N/A | f.1.1 | Colicin |
| View | Download | 0.252 | N/A | N/A | a.4.3 | ARID-like |
| View | Download | 0.250 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.249 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.249 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.247 | N/A | N/A | a.11.2 | Second domain of FERM |
| View | Download | 0.245 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.244 | N/A | N/A | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.242 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.239 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.234 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.233 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.229 | N/A | N/A | a.118.12 | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |
| View | Download | 0.227 | N/A | N/A | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.227 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.224 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.224 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.223 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.221 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.219 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.217 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.213 | N/A | N/A | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.211 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.206 | N/A | N/A | c.95.1 | Thiolase-like |
| View | Download | 0.204 | N/A | N/A | e.34.1 | NSP3 homodimer |
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Region A: Residues: [1032-1420] |
1 11 21 31 41 51
| | | | | |
1 CDIPDSILKD YISTLRNTFI AENNEYVVDG SKQLYLAQIL DMLLKYEDSI YLDDICLLGL 60
61 YSPFYEAQLS TLQYMNTNFH WETTRNSEFL EQLQLLLRVP DLLPMAKALV VKILSRKKNT 120
121 LSLTTCTDLL KTNNSEDTKL AAVSSLSAKL SSQTFHQVWN LLQGFFADSC SKDFRLASLE 180
181 CLTAYPESCK NSRILLQLYN FLWDDDSEIR EKASFYLNKN FIQTADWEYN RNTSVTALIF 240
241 TKKFVDVFTS SEVVEELCLQ LFQYLNEYDM FAAEESAKNC LFTIEKDNQF INELQKAMHI 300
301 LNMIKLTGRD ISKCYKDQIH HLKSALLEHF NTEDFKDSPL GWCSNAEIFS RITLLKELIQ 360
361 HYSPSDYENF INVLTKHSVH PLIISYSQL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 1.68714838468719 | bayes_pls_golite062009 |
| protein binding | 1.3800948965226 | bayes_pls_golite062009 |
| RNA binding | 0.538045152794259 | bayes_pls_golite062009 |
|
Region A: Residues: [1256-1420] |
1 11 21 31 41 51
| | | | | |
1 ADWEYNRNTS VTALIFTKKF VDVFTSSEVV EELCLQLFQY LNEYDMFAAE ESAKNCLFTI 60
61 EKDNQFINEL QKAMHILNMI KLTGRDISKC YKDQIHHLKS ALLEHFNTED FKDSPLGWCS 120
121 NAEIFSRITL LKELIQHYSP SDYENFINVL TKHSVHPLII SYSQL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
