YRC Public Data Repository - Protein Structure Prediction

Protein:	YHM2
Organism:	Saccharomyces cerevisiae
Length:	314 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHM2.

Description	E-value	Query Range	Subject Range
ADT3_BOVIN - ADP/ATP translocase 3 OS=Bos taurus GN=SLC25A6 PE=1 SV=3	6.0E-79	[14..302]	[3..298]
gi\|90085585 - gi\|90085585\|dbj\|BAE91533.1\| unnamed protein product [Macaca fascicularis] SLC25A6 - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6	3.0E-78	[14..302]	[3..298]
ADT1_MOUSE - ADP/ATP translocase 1 OS=Mus musculus GN=Slc25a4 PE=1 SV=4	4.0E-78	[14..302]	[3..298]
ADT1_RAT - ADP/ATP translocase 1 OS=Rattus norvegicus GN=Slc25a4 PE=1 SV=3	7.0E-78	[14..302]	[3..298]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	8.0E-78	[14..302]	[188..470]

Back

Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSTTNTAAA NVIEKKPVSF SNILLGACLN LSEVTTLGQP LEVVKTTMAA NRNFTFLESV  60
   61 KHVWSRGGIL GYYQGLIPWA WIEASTKGAV LLFVSAEAEY RFKSLGL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	2.60206
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNFASGILGG VTGGVTQAYL TMGFCTCMKT VEITRHKSAS AGGVPQSSWS VFKNIYKKEG  60
   61 IRGINKGVNA VAIRQMTNWG SRFGLSRLVE DGIRKITGK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.769551
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [207-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNKDDKLNPF EKIGASALGG GLSAWNQPIE VIRVEMQSKK EDPNRPKNLT VGKTFKYIYQ  60
   61 SNGLKGLYRG VTPRIGLGIW QTVFMVGFGD MAKEFVARMT GETPVAKH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.79588
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits