YRC Public Data Repository - Protein Structure Prediction

Protein:	MTF1
Organism:	Saccharomyces cerevisiae
Length:	341 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MTF1.

Description	E-value	Query Range	Subject Range
MTF1 - Mitochondrial RNA polymerase specificity factor with structural similarity to S-adenosylmethionine-d... gi\|207342135 - gi\|207342135\|gb\|EDZ69993.1\| YMR228Wp-like protein [Saccharomyces cerevisiae AWRI1631] MTF1_YEAST - Mitochondrial transcription factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTF...	2.0E-88	[1..341]	[1..341]
MTF1_SACDO - Mitochondrial transcription factor 1 OS=Saccharomyces douglasii GN=MTF1 PE=3 SV=3 MTF1_SACPA - Mitochondrial transcription factor 1 OS=Saccharomyces paradoxus GN=MTF1 PE=3 SV=3	4.0E-88	[1..341]	[1..341]
MTF1_LACKL - Mitochondrial transcription factor 1 OS=Lachancea kluyveri GN=MTF1 PE=3 SV=3	8.0E-75	[1..336]	[1..335]
KSGA_PASMU, RSMA... - Ribosomal RNA small subunit methyltransferase A OS=Pasteurella multocida GN=rsmA PE=3 SV=1, Dimethyl... RSMA_PASMU - Ribosomal RNA small subunit methyltransferase A OS=Pasteurella multocida (strain Pm70) GN=rsmA PE=3 ...	6.0E-61	[13..322]	[5..273]
RSMA_HAEIN, KSGA... - Ribosomal RNA small subunit methyltransferase A OS=Haemophilus influenzae GN=rsmA PE=3 SV=1, Dimethy... RSMA_HAEIN - Ribosomal RNA small subunit methyltransferase A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 1... gi\|145628930, gi... - gi\|145628930\|ref\|ZP_01784730.1\| dimethyladenosine transferase [Haemophilus influenzae 22.1-21], gi\|1...	7.0E-61	[13..322]	[5..273]
RSMA_STRP2 - Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae serotype 2 (strain D39 /... gi\|168492040, gi... - gi\|183573705\|gb\|EDT94233.1\| dimethyladenosine transferase [Streptococcus pneumoniae CDC0288-04], gi\|... gi\|25286073 - gi\|25286073\|pir\|\|E98096 dimethyladenosine transferase (EC 2.1.1.-) [imported] - Streptococcus pneumo... RSMA_STRR6 - Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R...	2.0E-60	[9..319]	[10..286]
gi\|25286079, gi\|... - gi\|25286080\|pir\|\|AF2712 rRNA-adenine N6,N6-dimethyltransferase [imported] - Agrobacterium tumefacien... RSMA_AGRFC - Ribosomal RNA small subunit methyltransferase A OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN...	3.0E-60	[5..318]	[7..276]
gi\|25286069 - gi\|25286069\|pir\|\|C95232 dimethyladenosine transferase [imported] - Streptococcus pneumoniae (strain ... gi\|15901808, gi\|... - gi\|15901808\|ref\|NP_346412.1\| dimethyladenosine transferase [Streptococcus pneumoniae TIGR4], gi\|1497...	5.0E-60	[12..319]	[2..275]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVPIPGIKD ISKLKFFYGF KYLWNPTVYN KIFDKLDLTK TYKHPEELKV LDLYPGVGIQ  60
   61 SAIFYNKYCP RQYSLLEKRS SLYKFLNAKF EGSPLQILKR DPYDWSTYSN LIDEERIFVP 120
  121 EVQSSDHIND KFLTVANVTG EGSEGLIMQW LSCIGNKNWL YRFGKVKMLL WMPSTTARKL 180
  181 LARPGMHSRS KCSVVREAFT DTKLIAISDA NELKGFDSQC IEEWDPILFS AAEIWPTKGK 240
  241 PIALVEMDPI DFDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10089.0
Match:	1i4wA_
Description:	Transcription factor sc-mtTFB
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [255-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVDNWDYVTR HLMILKRTPL NTVMDSLGHG GQQYFNSRIT DKDLLKKCPI DLTNDEFIYL  60
   61 TKLFMEWPFK PDILMDFVDM YQTEHSG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10089.0
Match:	1i4wA_
Description:	Transcription factor sc-mtTFB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits