| Protein: | FMP42 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 504 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FMP42.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..504] | [1..504] |
|
|
0.0 | [8..465] | [102..608] |
|
|
0.0 | [8..465] | [12..513] |
|
|
1.0E-29 | [64..209] | [46..190] |
|
|
2.0E-28 | [61..190] | [62..194] |
|
Region A: Residues: [1-211] |
1 11 21 31 41 51
| | | | | |
1 MTSTRTLRYA QVACACIWCL FSAGIIFGFA ALKPILISEG VYHELCDPKD GDRLLCTAQD 60
61 LKLNFIFALS ATVTNIMALP VGKILDMYGP RVCGIIGSCL LFLASGNFIS AKHLVSLWDP 120
121 YLVGYTLLAV AGPFVFISCF QLANSFPQRS GTVLALLTGS FDSSSALFLL YRLLYQNWFP 180
181 TLNVSRFFTL YLIVPVFILA CQLTIMPHSS Y
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| transporter activity | 3.82096685159505 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.34396155292818 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.07161916881404 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 3.00564985710417 | bayes_pls_golite062009 |
| organic acid transmembrane transporter activity | 2.05049771748124 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 1.75140121218978 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.46819549608723 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.34985844043603 | bayes_pls_golite062009 |
| binding | 1.02703439347949 | bayes_pls_golite062009 |
| secondary active transmembrane transporter activity | 0.869150152038001 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 0.339747214378126 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 0.339747214378126 | bayes_pls_golite062009 |
| symporter activity | 0.327558013224678 | bayes_pls_golite062009 |
| solute:cation symporter activity | 0.327558013224678 | bayes_pls_golite062009 |
| glycerol transmembrane transporter activity | 0.222664452597504 | bayes_pls_golite062009 |
|
Region A: Residues: [212-282] |
1 11 21 31 41 51
| | | | | |
1 KTVNHIAKIA VEGLDENGRL IEGDTGSGII PDEQERQSLI AIEREEDSIP SRPQRRKSVL 60
61 ETYVEDKLQK K
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.654 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.658 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.606 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.500 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.454 | a.4.1 | Homeodomain-like |
| View | Download | 0.444 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.422 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.402 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.387 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.387 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.383 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.368 | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.367 | a.64.1 | Saposin |
| View | Download | 0.360 | a.39.1 | EF-hand |
| View | Download | 0.336 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.336 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.332 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.322 | a.112.1 | Description not found. |
| View | Download | 0.321 | a.39.1 | EF-hand |
| View | Download | 0.319 | a.64.1 | Saposin |
| View | Download | 0.314 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.301 | a.28.1 | ACP-like |
| View | Download | 0.298 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.295 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.282 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.280 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.280 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.278 | a.112.1 | Description not found. |
| View | Download | 0.277 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.274 | a.118.1 | ARM repeat |
| View | Download | 0.263 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.257 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.252 | a.112.1 | Description not found. |
| View | Download | 0.242 | a.140.2 | SAP domain |
| View | Download | 0.240 | a.28.1 | ACP-like |
| View | Download | 0.235 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.234 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.233 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.225 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.218 | a.64.1 | Saposin |
| View | Download | 0.217 | a.112.1 | Description not found. |
| View | Download | 0.214 | a.4.7 | Ribosomal protein L11, C-terminal domain |
| View | Download | 0.212 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.207 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.204 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.204 | a.39.4 | Hypothetical protein MTH865 |
| View | Download | 0.203 | a.39.1 | EF-hand |
|
Region A: Residues: [283-504] |
1 11 21 31 41 51
| | | | | |
1 SGGIFGVLHG KSAYEQIKSP WFYLMLLFAL VAMLRINYFI ATVRTQEEYL LNDPDLALKL 60
61 NSIFDMLLPL GGAVSIPFIG LLLDHTDTLS TLTILFTTST AIGVFGLIPN SFTWNLIGIV 120
121 LLVVYRPFYY TVVSDYSSKV FGFDTFGTVY GLLSCICGIF NMSQNLLDKW THTTFNMNPF 180
181 PINLTLVILT VVFSLTLTFY IRSQILPKPV NERGLSSNYQ TI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
