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View Structure Prediction Details

Protein: YMR196W
Organism: Saccharomyces cerevisiae
Length: 1088 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR196W.

Description E-value Query
Range
Subject
Range
gi|49528540, gi|... - gi|50293631|ref|XP_449227.1| unnamed protein product [Candida glabrata], gi|49528540|emb|CAG62201.1|...
gi|49528540 - gi|49528540|emb|CAG62201.1| unnamed protein product [Candida glabrata]
1800.0 [0..1] [1068..1]
gi|11280532, gi|... - gi|7800868|emb|CAB91226.1| conserved hypothetical protein [Neurospora crassa], pir||T49425 hypotheti...
1741.0 [0..12] [956..11]
gi|28918278, gi|... - gi|32415455|ref|XP_328207.1| hypothetical protein ( hypothetical protein B17C10.60 [imported] - Neur...
gi|85083805 - gi|85083805|ref|XP_957191.1| hypothetical protein ( hypothetical protein B17C10.60 [imported] - Neur...
1718.0 [0..12] [956..11]
gi|116204665, gi... - gi|88176344|gb|EAQ83812.1| hypothetical protein CHGG_10216 [Chaetomium globosum CBS 148.51], gi|1162...
1572.0 [0..12] [1014..11]
gi|49641118 - gi|49641118|emb|CAH02379.1| KLLA0B10263p [Kluyveromyces lactis]
gi|49641118, gi|... - gi|50304073|ref|XP_451986.1| unnamed protein product [Kluyveromyces lactis], gi|49641118|emb|CAH0237...
1564.0 [0..12] [1072..6]
gi|44984241 - gi|44984241|gb|AAS53207.1| AFL167Cp [Ashbya gossypii ATCC 10895]
gi|45198354, gi|... - gi|45198354|ref|NP_985383.1| AFL167Cp [Ashbya gossypii ATCC 10895], gi|44984241|gb|AAS53207.1| AFL16...
1563.0 [0..8] [1073..9]
gi|46105342, gi|... - gi|46105342|ref|XP_380475.1| hypothetical protein FG00299.1 [Gibberella zeae PH-1], gi|42545846|gb|E...
1536.0 [0..12] [985..11]
gi|169774741 - gi|169774741|ref|XP_001821838.1| hypothetical protein [Aspergillus oryzae RIB40]
gi|238496661, gi... - gi|238496661|ref|XP_002379566.1| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi|22...
gi|83769701 - gi|83769701|dbj|BAE59836.1| unnamed protein product [Aspergillus oryzae]
1486.0 [0..4] [962..3]
gi|114196231, gi... - gi|115383984|ref|XP_001208539.1| hypothetical protein ATEG_01174 [Aspergillus terreus NIH2624], gi|1...
1478.0 [0..4] [962..3]

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Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLRDKFVD STVEEERLRE NRNHEKYWYR WGPYLSERSW ATVREDYSLN GDAWSNFPFE  60
   61 HANARVFRWG EDGLFGVSDN KQLVCMNVAL WNGKDERLKE RLFGLTGPQG NHGEDVKELY 120
  121 FYLDNTPTHS YMKALYKYPF KKAFPYKELV QKNGERGYED KEFEVYDIDG LYRDSE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [177-274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGDNPYFDVF FEMAKDDENP SELNFRLTIH NRSKIDSGEL YIAPQLFFRN TWAFDGTRTK  60
   61 DKPLLERDAE AANLINMTHK KYGNCQMVFQ PSPGGFSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [275-455]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTNEEEEDKE VEDIDPLLLF TDNESNLVKL FNEEKNPSEY TKDAFEEYLV QGKTDAVNPE  60
   61 NKGTKACAVY HFKNIPPGEY VTVRYKFTND PKNSIFKAQN LAVVDEDEFD LIFDNREEEA 120
  121 DNFYWRITPL PISDELRNLQ RQAFSGLLWT KQFYNFTYDA WYNGDANVKP RPPPNRANGR 180
  181 N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [456-596]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNWKHLYIED ILSMPDKWEY PFFASWDTAF HCIPLAMIDP EFAKRQLDLL TREWYMHPNG  60
   61 QIPAYEWNFN DVNPPVHAWA VYRVFKIERN MYNREDRTFL ERVFQKLLLN FTWWVNRKDT 120
  121 EGKNVFEGGF LGLDNIGVFN R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 2ds3A
Description: No description for 2ds3A was found.

Predicted Domain #5
Region A:
Residues: [597-1005]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEPLPTGGTL EQADSTGWMA FFSLQMLNIA LELAKENPVY EDIASKFFEH FILISDSMSF  60
   61 EYATDITGEK CKEVIKQNLW NEADKFYYDA ISWGDHKVQL PIRSLVGLIP LYASMTLEPS 120
  121 IIKQFRGFKK RVDWFVNNRP EIFDRNIASM SKKGVGERLL LSLVTKERLT AILSRLLDET 180
  181 EFLSPYGIRS LSKYHEKHPF EMNVNGVEYM VKYLPGESDS GMFGGNSNWR GPIWFPTSFL 240
  241 IMEALQRFYL YYGSDFKVEC PVGSGDYLNL AEVAEELGYR MIHLFVPDEN GERAIHYGDH 300
  301 SKFLSSDPYF RDYVPFFEYF DGDTGRGLGA SHQCGWTALV AKWISDVGIS CVRLPRTPRS 360
  361 SVATTASTES SEQGPKMKRM ARRKSAKSLV NYTATILDLT EEEKRHHRI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.7
Match: 2jf4A
Description: No description for 2jf4A was found.

Predicted Domain #6
Region A:
Residues: [1006-1088]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGTHSGLTPQ SSISSDKARH LMEEMNEEEG IHETVVPEDR HNFETKLIGK LKDKVKNMKV  60
   61 TDKAKDEDID PMDPMSPLNK DVS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle