| Protein: | YMR196W |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1088 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR196W.
| Description | E-value | Query Range |
Subject Range |
|
|
1800.0 | [0..1] | [1068..1] |
|
|
1741.0 | [0..12] | [956..11] |
|
|
1718.0 | [0..12] | [956..11] |
|
|
1572.0 | [0..12] | [1014..11] |
|
|
1564.0 | [0..12] | [1072..6] |
|
|
1563.0 | [0..8] | [1073..9] |
|
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1536.0 | [0..12] | [985..11] |
|
|
1486.0 | [0..4] | [962..3] |
|
|
1478.0 | [0..4] | [962..3] |
|
Region A: Residues: [1-176] |
1 11 21 31 41 51
| | | | | |
1 MNKLRDKFVD STVEEERLRE NRNHEKYWYR WGPYLSERSW ATVREDYSLN GDAWSNFPFE 60
61 HANARVFRWG EDGLFGVSDN KQLVCMNVAL WNGKDERLKE RLFGLTGPQG NHGEDVKELY 120
121 FYLDNTPTHS YMKALYKYPF KKAFPYKELV QKNGERGYED KEFEVYDIDG LYRDSE
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [177-274] |
1 11 21 31 41 51
| | | | | |
1 TGDNPYFDVF FEMAKDDENP SELNFRLTIH NRSKIDSGEL YIAPQLFFRN TWAFDGTRTK 60
61 DKPLLERDAE AANLINMTHK KYGNCQMVFQ PSPGGFSS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [275-455] |
1 11 21 31 41 51
| | | | | |
1 GTNEEEEDKE VEDIDPLLLF TDNESNLVKL FNEEKNPSEY TKDAFEEYLV QGKTDAVNPE 60
61 NKGTKACAVY HFKNIPPGEY VTVRYKFTND PKNSIFKAQN LAVVDEDEFD LIFDNREEEA 120
121 DNFYWRITPL PISDELRNLQ RQAFSGLLWT KQFYNFTYDA WYNGDANVKP RPPPNRANGR 180
181 N
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [456-596] |
1 11 21 31 41 51
| | | | | |
1 KNWKHLYIED ILSMPDKWEY PFFASWDTAF HCIPLAMIDP EFAKRQLDLL TREWYMHPNG 60
61 QIPAYEWNFN DVNPPVHAWA VYRVFKIERN MYNREDRTFL ERVFQKLLLN FTWWVNRKDT 120
121 EGKNVFEGGF LGLDNIGVFN R
|
| Detection Method: | |
| Confidence: | 4.221849 |
| Match: | 2ds3A |
| Description: | No description for 2ds3A was found. |
|
Region A: Residues: [597-1005] |
1 11 21 31 41 51
| | | | | |
1 SEPLPTGGTL EQADSTGWMA FFSLQMLNIA LELAKENPVY EDIASKFFEH FILISDSMSF 60
61 EYATDITGEK CKEVIKQNLW NEADKFYYDA ISWGDHKVQL PIRSLVGLIP LYASMTLEPS 120
121 IIKQFRGFKK RVDWFVNNRP EIFDRNIASM SKKGVGERLL LSLVTKERLT AILSRLLDET 180
181 EFLSPYGIRS LSKYHEKHPF EMNVNGVEYM VKYLPGESDS GMFGGNSNWR GPIWFPTSFL 240
241 IMEALQRFYL YYGSDFKVEC PVGSGDYLNL AEVAEELGYR MIHLFVPDEN GERAIHYGDH 300
301 SKFLSSDPYF RDYVPFFEYF DGDTGRGLGA SHQCGWTALV AKWISDVGIS CVRLPRTPRS 360
361 SVATTASTES SEQGPKMKRM ARRKSAKSLV NYTATILDLT EEEKRHHRI
|
| Detection Method: | |
| Confidence: | 2.7 |
| Match: | 2jf4A |
| Description: | No description for 2jf4A was found. |
|
Region A: Residues: [1006-1088] |
1 11 21 31 41 51
| | | | | |
1 GGTHSGLTPQ SSISSDKARH LMEEMNEEEG IHETVVPEDR HNFETKLIGK LKDKVKNMKV 60
61 TDKAKDEDID PMDPMSPLNK DVS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.566 | a.64.1 | Saposin |
| View | Download | 0.566 | a.64.1 | Saposin |
| View | Download | 0.519 | d.271.1 | Description not found. |
| View | Download | 0.439 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.436 | d.58.49 | YajQ-like |
| View | Download | 0.436 | d.58.49 | YajQ-like |
| View | Download | 0.423 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.423 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.379 | a.64.1 | Saposin |
