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View Structure Prediction Details

Protein: RGM1
Organism: Saccharomyces cerevisiae
Length: 211 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGM1.

Description E-value Query
Range
Subject
Range
gi|19263667 - gi|19263667|gb|AAH25265.1| ZNF3 protein [Homo sapiens]
5.0E-92 [2..210] [175..367]
Z287_MOUSE, ZN28... - Zinc finger protein 287 OS=Mus musculus GN=Znf287 PE=2 SV=1, (Q9EQB9) Zinc finger protein 287 (Zfp-2...
2.0E-83 [2..210] [433..653]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGKQPKRNK DNASVKRNYR CVGYPDCNMS FNRTEHLARH IRKHTGEKPF QCNICLKFFS  60
   61 RIDNLRQHQS S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 104.533179
Match: 1lu6A_
Description: No description for 1lu6A_ was found.

Predicted Domain #2
Region A:
Residues: [72-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHSDVDLMSL RRLQQSANST ANDPNATRMF PQLRPYGIVV QPAPVPYNLP ISTPASPQDT  60
   61 ISLYAP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 104.533179
Match: 1lu6A_
Description: No description for 1lu6A_ was found.

Predicted Domain #3
Region A:
Residues: [138-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYFPHPMPSA PIPLPHQPPP LPIYSYMQPL FLNHTPIQNH NIVELPPDSS DTPASPSKVQ  60
   61 SFDQAKDASP NAKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle