| Protein: | RGM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 211 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGM1.
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-92 | [2..210] | [175..367] |
|
|
2.0E-83 | [2..210] | [433..653] |
|
Region A: Residues: [1-71] |
1 11 21 31 41 51
| | | | | |
1 MRGKQPKRNK DNASVKRNYR CVGYPDCNMS FNRTEHLARH IRKHTGEKPF QCNICLKFFS 60
61 RIDNLRQHQS S
|
| Detection Method: |  |
| Confidence: | 104.533179 |
| Match: | 1lu6A_ |
| Description: | No description for 1lu6A_ was found. |
|
Region A: Residues: [72-137] |
1 11 21 31 41 51
| | | | | |
1 VHSDVDLMSL RRLQQSANST ANDPNATRMF PQLRPYGIVV QPAPVPYNLP ISTPASPQDT 60
61 ISLYAP
|
| Detection Method: | |
| Confidence: | 104.533179 |
| Match: | 1lu6A_ |
| Description: | No description for 1lu6A_ was found. |
|
Region A: Residues: [138-211] |
1 11 21 31 41 51
| | | | | |
1 PYFPHPMPSA PIPLPHQPPP LPIYSYMQPL FLNHTPIQNH NIVELPPDSS DTPASPSKVQ 60
61 SFDQAKDASP NAKK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.455 | 0.617 | RNA polymerase II transcription factor activity | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.592 | 0.345 | RNA polymerase II transcription factor activity | a.4.1 | Homeodomain-like |
| View | Download | 0.459 | 0.002 | negative regulation of transcription from RNA polymerase II promoter | a.60.2 | RuvA domain 2-like |
| View | Download | 0.450 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.447 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.394 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.393 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.386 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.382 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.374 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.369 | N/A | N/A | d.29.1 | Ribosomal protein L31e |
| View | Download | 0.349 | N/A | N/A | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.310 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.296 | N/A | N/A | b.11.1 | gamma-Crystallin-like |
| View | Download | 0.295 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.288 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.279 | N/A | N/A | d.15.4 | 2Fe-2S ferredoxin-like |
| View | Download | 0.271 | N/A | N/A | d.15.2 | CAD & PB1 domains |
| View | Download | 0.265 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.251 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.245 | N/A | N/A | a.150.1 | Anti-sigma factor AsiA |
| View | Download | 0.237 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.219 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
