YRC Public Data Repository - Protein Structure Prediction

Protein:	MMT1
Organism:	Saccharomyces cerevisiae
Length:	510 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MMT1.

Description	E-value	Query Range	Subject Range
gi\|190408401 - gi\|190408401\|gb\|EDV11666.1\| mitochondrial metal transporter [Saccharomyces cerevisiae RM11-1a] MMT1_YEAST - Mitochondrial metal transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MMT1 P... MMT1 - Putative metal transporter involved in mitochondrial iron accumulation; closely related to Mmt2p	0.0	[1..510]	[1..510]
gi\|8118609 - gi\|8118609\|gb\|AAF73055.1\| HUEL-like protein [Mus musculus]	6.0E-70	[17..427]	[5..380]
SLC30A5 - solute carrier family 30 (zinc transporter), member 5 HGNC:19089\|MIM:6... - carrier family 30 (zinc transporter), member 5 gi\|157169762, gi... - gi\|190689809\|gb\|ACE86679.1\| solute carrier family 30 (zinc transporter), member 5 protein [synthetic...	1.0E-66	[132..500]	[387..746]
gi\|165924663, gi... - gi\|165924663\|ref\|ZP_02220495.1\| zinc transporter ZitB [Yersinia pestis biovar Orientalis str. F19910... gi\|166011602, gi... - gi\|166011602\|ref\|ZP_02232500.1\| zinc transporter ZitB [Yersinia pestis biovar Antiqua str. E1979001]... gi\|166211318, gi... - gi\|166211318\|ref\|ZP_02237353.1\| zinc transporter ZitB [Yersinia pestis biovar Antiqua str. B42003004... gi\|167050467, gi... - gi\|167399759\|ref\|ZP_02305277.1\| zinc transporter ZitB [Yersinia pestis biovar Antiqua str. UG05-0454... gi\|166962575, gi... - gi\|167419834\|ref\|ZP_02311587.1\| zinc transporter ZitB [Yersinia pestis biovar Orientalis str. MG05-1... gi\|167056778, gi... - gi\|167423929\|ref\|ZP_02315682.1\| zinc transporter ZitB [Yersinia pestis biovar Mediaevalis str. K1973... gi\|145599832, gi... - gi\|145599832\|ref\|YP_001163908.1\| zinc transporter ZitB [Yersinia pestis Pestoides F], gi\|145211528\|g... gi\|22126926, gi\|... - gi\|22126926\|ref\|NP_670349.1\| zinc transporter ZitB [Yersinia pestis KIM], gi\|21959965\|gb\|AAM86600.1\|... gi\|16121429, gi\|... - gi\|218928297\|ref\|YP_002346172.1\| zinc transporter ZitB [Yersinia pestis CO92], gi\|16121429\|ref\|NP_40... gi\|45435719, gi\|... - gi\|45440861\|ref\|NP_992400.1\| zinc transporter ZitB [Yersinia pestis biovar Microtus str. 91001], gi\|... gi\|108778517, gi... - gi\|108806604\|ref\|YP_650520.1\| zinc transporter ZitB [Yersinia pestis Antiqua], gi\|108778517\|gb\|ABG12... gi\|229679239, gi... - gi\|229903469\|ref\|ZP_04518582.1\| zinc efflux system [Yersinia pestis Nepal516], gi\|229679239\|gb\|EEO75... gi\|229894007, gi... - gi\|229894007\|ref\|ZP_04509193.1\| zinc efflux system [Yersinia pestis Pestoides A], gi\|229703892\|gb\|EE... gi\|229689517, gi... - gi\|229843170\|ref\|ZP_04463316.1\| zinc efflux system [Yersinia pestis biovar Orientalis str. India 195... gi\|149366871, gi... - gi\|149366871\|ref\|ZP_01888905.1\| putative cation transport protein [Yersinia pestis CA88-4125], gi\|14... gi\|229841066, gi... - gi\|229841066\|ref\|ZP_04461225.1\| zinc efflux system [Yersinia pestis biovar Orientalis str. PEXU2], g... gi\|165938380, gi... - gi\|89105186\|ref\|ZP_01177710.1\| COG1230: Co/Zn/Cd efflux system component [Yersinia pestis biovar Ori... ZITB_YERPE - Zinc transporter ZitB OS=Yersinia pestis GN=zitB PE=3 SV=1 gi\|167470005 - gi\|167470005\|ref\|ZP_02334709.1\| zinc transporter ZitB [Yersinia pestis FV-1] gi\|162353525, gi... - gi\|77636411\|ref\|ZP_00798485.1\| COG1230: Co/Zn/Cd efflux system component [Yersinia pestis Angola], g... gi\|152959323, gi... - gi\|77632122\|ref\|ZP_00794708.1\| COG1230: Co/Zn/Cd efflux system component [Yersinia pseudotuberculosi...	2.0E-63	[158..492]	[10..299]
gi\|213620884 - gi\|213620884\|ref\|ZP_03373667.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|213649742 - gi\|213649742\|ref\|ZP_03379795.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|213854580 - gi\|213854580\|ref\|ZP_03382820.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|214002834 - gi\|214002834\|ref\|ZP_03413569.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|213163246 - gi\|213163246\|ref\|ZP_03348956.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|213420141 - gi\|213420141\|ref\|ZP_03353207.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|213427705 - gi\|213427705\|ref\|ZP_03360455.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar T... gi\|16759692 - gi\|16759692\|ref\|NP_455309.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar Typh... ZITB_SALTI - Zinc transporter ZitB OS=Salmonella typhi GN=zitB PE=3 SV=1 ZITB_SALTI - Zinc transporter zitB OS=Salmonella typhi GN=zitB PE=3 SV=1 gi\|29142535, gi\|... - gi\|29142535\|ref\|NP_805877.1\| zinc transporter ZitB [Salmonella enterica subsp. enterica serovar Typh...	4.0E-62	[135..498]	[1..311]
CG8632-PA - This gene is referred to in FlyBase by the symbol Dmel\CG8632 (CG8632, FBgn0033762). It is a protein...	1.0E-61	[61..477]	[229..654]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRICVKRPC IKIVLSQVRP ALLVRKENLH ISTGVKVEKS SIINQKDPNK VRVEINELKR  60
   61 QAEIEKAAIK ELEKNPQYQK LAEAFNSHDH VHLRESETEQ NDIISLGTIR DYKSSKCEQA 120
  121 DKPSSLNLHS HTHSHGHTHS HAAHN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [146-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLLVLSTEQI RKNAGVRITW VGLGVNVGIA IGKFFGGIVF HSQALFADAI HAISDMVSDL  60
   61 LTLLSVGLAA NKPTADYPYG YGKIETVGSL AVSTILAMAG ISIGWSSLCA LVGPVIPHTI 120
  121 IDTIGNLGHA HTYSEDIIED VTDINAAWIA AASIAAKEWI FRATRKIAIN TNSNVLMANA 180
  181 WHHRVDSLTS LVALVAISTG YLVNIQSLDT IGGLIVSGLI IKAGGEGMCI AIKELIDQSV 240
  241 SRDDPRYLEI ETLVKDTLNK LISNNNSQKP YGLKELTLLS SGPNLRGHLT LEVPLQKWGN 300
  301 ILGVNEFEIV THHLRNVLTN EVSNLRRLDI EYVEEKNGEE NEHIKGQQNY KEDVLIKHDH 360
  361 TNTHI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	30.522879
Match:	PF01545
Description:	Cation efflux family

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits