| Protein: | MSS11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 758 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSS11.
| Description | E-value | Query Range |
Subject Range |
|
|
82.0 | [0..40] | [193..42] |
|
|
81.0 | [0..42] | [185..42] |
|
|
72.0 | [0..39] | [169..44] |
|
|
57.0 | [0..281] | [743..2584] |
|
Region A: Residues: [1-237] |
1 11 21 31 41 51
| | | | | |
1 MDNTTNINTN ERSSNTDFSS APNIKGLNSH TQLQFDADSR VFVSDVMAKN SKQLLYAHIY 60
61 NYLIKNNYWN SAAKFLSEAD LPLSRINGSA SGGKTSLNAS LKQGLMDIAS KGDIVSEDGL 120
121 LPSKMLMDAN DTFLLEWWEI FQSLFNGDLE SGYQQDHNPL RERIIPILPA NSKSNMPSHF 180
181 SNLPPNVIPP TQNSFPVSEE SFRPNGDGSN FNLNDPTNRN VSERFLSRTS GVYDKQN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [238-449] |
1 11 21 31 41 51
| | | | | |
1 SANFAPDTAI NSDIAGQQYA TINLHKHFND LQSPAQPQQS SQQQIQQPQH QPQHQPQQQQ 60
61 QQQQQQQQQQ QQQQQQQQQQ QQQQQQHQQQ QQTPYPIVNP QMVPHIPSEN SHSTGLMPSV 120
121 PPTNQQFNAQ TQSSMFSDQQ RFFQYQLHHQ NQGQAPSFQQ SQSGRFDDMN AMKMFFQQQA 180
181 LQQNSLQQNL GNQNYQSNTR NNTAEETTPT ND
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [450-699] |
1 11 21 31 41 51
| | | | | |
1 NNANGNSLLQ EHIRARFNKM KTIPQQMKNQ STVANPVVSD ITSQQQYMHM MMQRMAANQQ 60
61 LQNSAFPPDT NRIAPANNTM PLQPGNMGSP VIENPGMRQT NPSGQNPMIN MQPLYQNVSS 120
121 AMHAFAPQQQ FHLPQHYKTN TSVPQNDSTS VFPLPNNNNN NNNNNNNNNN NNSNNSNNNN 180
181 NNNNNNNNSN NTPTVSQPSS KCTSSSSTTP NITTTIQPKR KQRVGKTKTK ESRKVAAAQK 240
241 VMKSKKLEQN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [700-758] |
1 11 21 31 41 51
| | | | | |
1 GDSAATNFIN VTPKDSGGKG TVKVQNSNSQ QQLNGSFSMD TETFDIFNIG DFSPDLMDS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.842 | d.9.2 | Description not found. |
| View | Download | 0.842 | b.34.13 | Chromo domain-like |
| View | Download | 0.816 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.812 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.804 | g.41.8 | Zn-binding ribosomal proteins |
| View | Download | 0.801 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.801 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.795 | b.34.3 | Myosin S1 fragment, N-terminal domain |
| View | Download | 0.788 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.786 | d.9.1 | Interleukin 8-like chemokines |
