| Protein: | NDE1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 560 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDE1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..560] | [1..560] |
|
|
0.0 | [7..559] | [4..549] |
|
|
5.0E-94 | [111..543] | [8..435] |
|
|
6.0E-94 | [107..535] | [36..467] |
|
|
7.0E-94 | [102..536] | [33..467] |
|
Region A: Residues: [1-102] |
1 11 21 31 41 51
| | | | | |
1 MIRQSLMKTV WANSSRFSLQ SKSGLVKYAK NRSFHAARNL LEDKKVILQK VAPTTGVVAK 60
61 QSFFKRTGKF TLKALLYSAL AGTAYVSYSL YREANPSTQV PQ
|
| Detection Method: |  |
| Confidence: | 4.0 |
| Match: | 1fcdA_ |
| Description: | Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [103-144] |
1 11 21 31 41 51
| | | | | |
1 SDTFPNGSKR KTLVILGSGW GSVSLLKNLD TTLYNVVVVS PR
|
|
Region B: Residues: [182-225] |
1 11 21 31 41 51
| | | | | |
1 HYYEAEAYDV DPENKTIKVK SSAKNNDYDL DLKYDYLVVG VGAQ
|
|
Region C: Residues: [384-458] |
1 11 21 31 41 51
| | | | | |
1 APREVSKNLM TKLEEQDSRR GLLIDNKLQL LGAKGSIFAI GDCTFHPGLF PTAQVAHQEG 60
61 EYLAQYFKKA YKIDQ
|
| Detection Method: | |
| Confidence: | 119.68867 |
| Match: | 1ebdA_ |
| Description: | Dihydrolipoamide dehydrogenase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [145-181] |
1 11 21 31 41 51
| | | | | |
1 NYFLFTPLLP STPVGTIELK SIVEPVRTIA RRSHGEV
|
|
Region B: Residues: [226-383] |
1 11 21 31 41 51
| | | | | |
1 PNTFGTPGVY EYSSFLKEIS DAQEIRLKIM SSIEKAASLS PKDPERARLL SFVVVGGGPT 60
61 GVEFAAELRD YVDQDLRKWM PELSKEIKVT LVEALPNILN MFDKYLVDYA QDLFKEEKID 120
121 LRLKTMVKKV DATTITAKTG DGDIENIPYG VLVWATGN
|
|
Region C: Residues: [459-466] |
1 11 21 31 41 51
| | | | | |
1 LNWKMTHA
|
| Detection Method: | |
| Confidence: | 119.68867 |
| Match: | 1ebdA_ |
| Description: | Dihydrolipoamide dehydrogenase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [467-560] |
1 11 21 31 41 51
| | | | | |
1 KDDSEVARLK NQIVKTQSQI EDFKYNHKGA LAYIGSDKAI ADLAVGEAKY RLAGSFTFLF 60
61 WKSAYLAMCL SFRNRVLVAM DWAKVYFLGR DSSI
|
| Detection Method: | |
| Confidence: | 119.68867 |
| Match: | 1ebdA_ |
| Description: | Dihydrolipoamide dehydrogenase |
| Matching Structure (courtesy of the PDB): |
|
