YRC Public Data Repository - Protein Structure Prediction

Protein:	JLP2
Organism:	Saccharomyces cerevisiae
Length:	208 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for JLP2.

Description	E-value	Query Range	Subject Range
gi\|151945834 - gi\|151945834\|gb\|EDN64066.1\| dnaJ-like protein [Saccharomyces cerevisiae YJM789] JLP2_YEAST - Protein JLP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=JLP2 PE=1 SV=2 JLP2 - Protein of unknown function, contains sequence that closely resembles a J domain (typified by the E....	6.0E-59	[1..208]	[1..208]
ENSPTRT00000051060 - null CCDC25 - coiled-coil domain containing 25	4.0E-58	[1..204]	[1..195]
gi\|7573407, gi\|1... - gi\|7573407\|emb\|CAB87710.1\| putative protein [Arabidopsis thaliana], gi\|23297161\|gb\|AAN13108.1\| unkno...	5.0E-57	[1..204]	[1..194]
CG4593-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG4593 (CG4593, FBgn0029929). It is a protein...	9.0E-57	[1..205]	[1..196]
gi\|12854958 - gi\|12854958\|dbj\|BAB30178.1\| unnamed protein product [Mus musculus]	3.0E-54	[1..178]	[1..174]
gi\|215695266, gi... - gi\|34909556\|ref\|NP_916125.1\| P0046E05.9 [Oryza sativa (japonica cultivar-group)], gi\|222619254\|gb\|EE...	3.0E-51	[1..204]	[1..194]
CE22473 - status:Partially_confirmed UniProt:Q9XW03 protein_id:CAA22448.1	2.0E-49	[1..188]	[1..181]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYFYESKPT EYSTPYQIVM GKDKFENDLL IKWSYRELNY VWFHADKYSS GHVYLKLRPN  60
   61 EKTIDDIPQE VICDCLQLCK SESIQGNKMP QCTILITPWH NLRKNRYMNP GEVSFKSLRQ 120
  121 CRKMECGARD NKILNRLAKT RVELF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [146-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNVEATLNEA KKTKNGDFFV NYIESNRSNL IEEEKLRKVA KKNQKKKNKQ SKDEVTDDMQ  60
   61 LEV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits