YRC Public Data Repository - Protein Structure Prediction

Protein:	ASC1
Organism:	Saccharomyces cerevisiae
Length:	319 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASC1.

Description	E-value	Query Range	Subject Range
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	0.0	[1..318]	[1184..1484]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	0.0	[1..318]	[951..1251]
RACK1_BOVIN - Receptor of activated protein C kinase 1 OS=Bos taurus GN=RACK1 PE=2 SV=3 tr\|M3VZL6\|M3VZL6... - Uncharacterized protein OS=Felis catus GN=RACK1 PE=4 SV=1 RACK1_CHICK - Receptor of activated protein C kinase 1 OS=Gallus gallus GN=RACK1 PE=2 SV=1 gi\|126309325 - gi\|126309325\|ref\|XP_001367237.1\| PREDICTED: similar to guanine nucleotide binding protein (G protein... ENSCJAT00000036876 - null GBLP_MACFA - Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Macaca fascicularis GN=GNB2L1 PE=2 SV=3 gi\|123981038, gi... - gi\|208966412\|dbj\|BAG73220.1\| guanine nucleotide binding protein (G protein), beta polypeptide 2-like... RACK1_MOUSE - Receptor of activated protein C kinase 1 OS=Mus musculus GN=Rack1 PE=1 SV=3 gi\|149726014 - gi\|149726014\|ref\|XP_001494930.1\| PREDICTED: G-beta-like protein [Equus caballus] GNB2L1 - guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 RACK1_RAT - Receptor of activated protein C kinase 1 OS=Rattus norvegicus GN=Rack1 PE=1 SV=3 RACK1_PIG - Receptor of activated protein C kinase 1 OS=Sus scrofa GN=RACK1 PE=1 SV=3 gi\|187609255 - gi\|187609255\|pdb\|2ZKQ\|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Compl... tr\|G1SJB4\|G1SJB4... - pep:known chromosome:oryCun2:11:31974445:31979734:-1 gene:ENSOCUG00000003245 transcript:ENSOCUT00000... gi\|169730361 - gi\|169730361\|gb\|ACA64762.1\| guanine nucleotide-binding protein beta subunit [Meleagris gallopavo] gi\|631532 - pir\|\|S45054 GTP-binding regulatory protein beta chain homolog - pig gi\|148231191, gi... - gi\|55250621\|gb\|AAH86231.1\| LOC495666 protein [Xenopus laevis], gi\|148231191\|ref\|NP_001088625.1\| hypo...	1.0E-94	[4..318]	[2..315]
gi\|436935, gi\|18... - gi\|436935\|gb\|AAA18951.1\| protein kinase C receptor, gi\|18543331\|ref\|NP_570090.1\| guanine nucleotide ...	1.0E-94	[4..318]	[2..315]

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Predicted Domain #1

Region A:
Residues: [1-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNEVLVLR GTLEGHNGWV TSLATSAGQP NLLLSASRDK TLISWKLTGD DQKFGVPVRS  60
   61 FKGHSHIVQD CTLTADGAYA LSASWDKTLR LWDVATGETY QRFVGHKSDV MSVDIDKKAS 120
  121 MIISGSRDKT IKVWTIKGQC LATLLGHNDW VSQVRVVPNE KADDDSVTII SAGNDKMVKA 180
  181 WNLNQFQIEA DFIGHNSNIN TLTASPDGTL IASAGKDGEI MLWNLAAKKA MYTLSAQDEV 240
  241 FSLAFSPNRY WLAAATATGI KVFSLDPQYL VDDLRPEFAG YSKAAEPHAV SLAWSADGQT 300
  301 LFAGYTDNVI RVWQVMTAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	185.056057
Match:	1erjA_
Description:	Tup1, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits