YRC Public Data Repository - Protein Structure Prediction

Protein:	MED11
Organism:	Saccharomyces cerevisiae
Length:	131 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED11.

Description	E-value	Query Range	Subject Range
MED11_CANGA - Mediator of RNA polymerase II transcription subunit 11 OS=Candida glabrata GN=MED11 PE=3 SV=1 MED11_CANGA - Mediator of RNA polymerase II transcription subunit 11 OS=Candida glabrata (strain ATCC 2001 / CBS 1...	132.0	[0..18]	[125..8]
gi\|49641218, gi\|... - gi\|50304273\|ref\|XP_452086.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641218\|emb\|CAH0247...	114.0	[0..12]	[125..76]
MED11_ASHGO - Mediator of RNA polymerase II transcription subunit 11 OS=Ashbya gossypii (strain ATCC 10895 / CBS 1... MED11_ASHGO - Mediator of RNA polymerase II transcription subunit 11 OS=Ashbya gossypii GN=MED11 PE=3 SV=1	107.0	[0..18]	[118..3]
MED11_DEBHA - Mediator of RNA polymerase II transcription subunit 11 - Debaryomyces hansenii (Yeast) (Torulaspora ... gi\|49656959, gi\|... - gi\|50425393\|ref\|XP_461290.1\| hypothetical protein DEHA0F23199g [Debaryomyces hansenii CBS767], gi\|49...	48.0	[0..21]	[125..11]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVLNTKSET KQENETMQPP YIQERLKSLN DIETQLCSML QEASQVTFIF GELKRGNESV  60
   61 KPQFENHVKQ FYERLDKSTT QLRKEIQLLD ENVGTRLLPI NVNKKALGQD TEKMEEQLDL 120
  121 LSAILDPSKS K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits