YRC Public Data Repository - Protein Structure Prediction

Protein:	VPS20
Organism:	Saccharomyces cerevisiae
Length:	221 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS20.

Description	E-value	Query Range	Subject Range
gi\|30681419, gi\|... - gi\|8567798\|gb\|AAF76370.1\| unknown protein [Arabidopsis thaliana], gi\|30681419\|ref\|NP_187675.2\| VPS60...	2.0E-36	[2..220]	[6..233]
CHMP5_MOUSE - Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=1 SV=1 CHMP5_RAT - Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1	9.0E-36	[2..218]	[6..219]
gi\|16876827, gi\|... - gi\|20127558\|ref\|NP_057494.2\| chromatin modifying protein 5 [Homo sapiens], gi\|16876827\|gb\|AAH16698.1...	2.0E-35	[2..218]	[6..219]
CE06928 - WBGene00016497 status:Predicted TR:Q22916 protein_id:AAC25860.1	3.0E-34	[3..210]	[57..261]
VPS20 - Myristoylated subunit of ESCRTIII, the endosomal sorting complex required for transport of transmemb... VPS20_YEAST - Vacuolar protein sorting-associated protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28... gi\|207342350 - gi\|207342350\|gb\|EDZ70137.1\| YMR077Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408308 - gi\|190408308\|gb\|EDV11573.1\| vacuolar protein sorting protein 20 [Saccharomyces cerevisiae RM11-1a]	7.0E-32	[1..221]	[1..221]
CG6259-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG6259 (CG6259, FBgn0036740). It is a protein... gi\|220948198, gi... - gi\|220957426\|gb\|ACL91256.1\| CG6259-PA [synthetic construct], gi\|220948198\|gb\|ACL86642.1\| CG6259-PA [...	7.0E-32	[2..219]	[6..223]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQKSSKVHI TKTDRAILEV KRSKDEIHKF TRRTDNLILV EKSQLKDLIR KNPENYKSNM  60
   61 KVRFLLKRIH YQEHLLQQAS DQLINLENMV STLEFKMVEK QFINGLKNGN EILKKLNKEF 120
  121 SNVDELMDDV QDQIAYQNEI NETLSRSLVG TSNYEDDLDK ELDALESELN PEKMNNAKVA 180
  181 NMPSTEGLPS LPQGEQTEQK EREEFATEER SDTKEPLALL S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits