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View Structure Prediction Details

Protein: YMR046C
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR046C.

Description E-value Query
Range
Subject
Range
YM13B_YEAST - Transposon Ty1-MR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
YMR045C - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
559.0 [0..1] [435..1]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS PISHGSACAS VTSKEVQTTQ DPLDISASKT EECEKVSTQA NSQQPTTPLS  60
   61 SAVPENHHHA SPQAAQVPLP QNGPYPQQRM MNTQQANISG WPVYGHPSLM PYPPYQMSPM 120
  121 Y

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 74.124939
Match: PF01021.10
Description: No description for PF01021.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [122-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APPGAQSQFT QYPQYVGTHL NTPSPESGNS FPDSSSAKSN MTSTNQHVRP PPILTSPNDF  60
   61 LNWVKIYIKF LQNSNLGDII PTATRKAVRQ M

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [213-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDDELTFLCH TFQLFAPSQF LPPWVKDILS VDYTDIMKIL SKSINKMQSD TQEVNDITTL  60
   61 ATLHYNGSTP ADAFEAEVTN ILDRLNNNGI PINNKVACQF IMRGLSGEYK FLRYAR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [329-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRCIHMTVAD LFSDIHSMYE EQQESKRNKS THRRSPSDEK KDSRTYTNTT KPKSITRNSQ  60
   61 KPNNSQSRTA RAHNVSTFNN SPGPDNDLIR GSTTEPIQLK NTHDLHLRPG TY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle