YRC Public Data Repository - Protein Structure Prediction

Protein:	TAP42
Organism:	Saccharomyces cerevisiae
Length:	366 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAP42.

Description	E-value	Query Range	Subject Range
gi\|190408266 - gi\|190408266\|gb\|EDV11531.1\| protein TAP42 [Saccharomyces cerevisiae RM11-1a] TAP42 - Essential protein involved in the TOR signaling pathway; physically associates with the protein phos... TAP42_YEAST - Type 2A phosphatase-associated protein 42 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...	0.0	[1..366]	[1..366]
gi\|61359007, gi\|... - gi\|61359015\|gb\|AAX41655.1\| immunoglobulin binding protein 1 [synthetic construct], gi\|61359007\|gb\|AA... IGBP1 - immunoglobulin (CD79A) binding protein 1	0.0	[16..366]	[23..339]
IGBP1_RAT - Immunoglobulin-binding protein 1 OS=Rattus norvegicus GN=Igbp1 PE=2 SV=2	0.0	[14..366]	[22..340]
IGBP1_MOUSE - Immunoglobulin-binding protein 1 OS=Mus musculus GN=Igbp1 PE=1 SV=1	0.0	[14..366]	[22..340]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-79	[23..361]	[44..372]
TAP46_ARATH - PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1 SV=2	9.0E-75	[25..361]	[25..398]
YCJ5_SCHPO - Uncharacterized protein C63.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC63.05 P... SPCC63.05 - TAP42 family protein	2.0E-72	[13..366]	[3..323]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVTEQFND IISLYSTKLE HTSLRQDSPE YQGLLLSTIK KLLNLKTAIF DRLALFSTNE  60
   61 TIDDVSTASI KFLAVDYYLG LLISRRQSND

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.943	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac

Predicted Domain #2

Region A:
Residues: [91-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDVAQRQSMK LIYLKKSVES FINFLTLLQD YKLLDPLVGE KLGNFKDRYN PQLSELYAQP  60
   61 KNNKDLSGAQ LKRKEKIELF QRNKEISTKL HCLELELKNN DEDHDHDELL RELYLMRLHH 120
  121 FSLDTINNIE QNLFECEMLS NFLKNSVHEV KSSGTQIRKE SNDDDSTGFT DKLENINKPL 180
  181 IDKKGQVLRN FTLVDKRQQL QQKVRGYGQY GPTMSVEEFL DKEFEEGRVL QGGEEPEQAP 240
  241 DEENMDWQDR ETYKAREWDE FKESHAKGSG NTMNRG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits