| Protein: | TAP42 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 366 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAP42.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..366] | [1..366] |
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0.0 | [16..366] | [23..339] |
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0.0 | [14..366] | [22..340] |
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0.0 | [14..366] | [22..340] |
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4.0E-79 | [23..361] | [44..372] |
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9.0E-75 | [25..361] | [25..398] |
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2.0E-72 | [13..366] | [3..323] |
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Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MASVTEQFND IISLYSTKLE HTSLRQDSPE YQGLLLSTIK KLLNLKTAIF DRLALFSTNE 60
61 TIDDVSTASI KFLAVDYYLG LLISRRQSND
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.943 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.807 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.797 | N/A | N/A | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.792 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.754 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.733 | N/A | N/A | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.720 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.689 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.670 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.649 | N/A | N/A | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.646 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.642 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.635 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.604 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.602 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.594 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.588 | N/A | N/A | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.572 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.562 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.561 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.544 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.540 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.510 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.507 | N/A | N/A | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.481 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.466 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.457 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.449 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.443 | N/A | N/A | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.442 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.427 | N/A | N/A | a.7.7 | BAG domain |
| View | Download | 0.425 | N/A | N/A | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.424 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.420 | N/A | N/A | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.412 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.411 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.410 | N/A | N/A | a.7.7 | BAG domain |
| View | Download | 0.400 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.398 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.393 | N/A | N/A | a.156.1 | S13-like H2TH domain |
| View | Download | 0.386 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.386 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.385 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.384 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.380 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.379 | N/A | N/A | d.6.1 | Prion-like |
| View | Download | 0.379 | N/A | N/A | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.372 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.371 | N/A | N/A | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.365 | N/A | N/A | a.30.1 | ROP protein |
| View | Download | 0.362 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.361 | N/A | N/A | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.359 | N/A | N/A | f.31.1 | Photosystem I reaction center subunit XI, PsaL |
| View | Download | 0.340 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.340 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.339 | N/A | N/A | a.79.1 | Antitermination factor NusB |
| View | Download | 0.331 | N/A | N/A | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.317 | N/A | N/A | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.316 | N/A | N/A | a.60.8 | HRDC-like |
| View | Download | 0.306 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.305 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.296 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.294 | N/A | N/A | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.290 | N/A | N/A | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.285 | N/A | N/A | c.55.1 | Actin-like ATPase domain |
| View | Download | 0.280 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.280 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.278 | N/A | N/A | f.16.1 | Gated mechanosensitive channel |
| View | Download | 0.269 | N/A | N/A | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.269 | N/A | N/A | a.135.1 | Tetraspanin |
| View | Download | 0.268 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.266 | N/A | N/A | c.55.4 | Translational machinery components |
| View | Download | 0.265 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.265 | N/A | N/A | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.264 | N/A | N/A | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.263 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.261 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.259 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.256 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.254 | N/A | N/A | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.253 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.250 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.244 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.243 | N/A | N/A | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.242 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.241 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.239 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.235 | N/A | N/A | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.235 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.235 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.234 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.233 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.232 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.227 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.226 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.225 | N/A | N/A | a.130.1 | Chorismate mutase II |
| View | Download | 0.221 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.220 | N/A | N/A | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.217 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.216 | N/A | N/A | a.54.1 | Domain of early E2A DNA-binding protein, ADDBP |
| View | Download | 0.213 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.210 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.207 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.205 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.201 | N/A | N/A | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
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Region A: Residues: [91-366] |
1 11 21 31 41 51
| | | | | |
1 SDVAQRQSMK LIYLKKSVES FINFLTLLQD YKLLDPLVGE KLGNFKDRYN PQLSELYAQP 60
61 KNNKDLSGAQ LKRKEKIELF QRNKEISTKL HCLELELKNN DEDHDHDELL RELYLMRLHH 120
121 FSLDTINNIE QNLFECEMLS NFLKNSVHEV KSSGTQIRKE SNDDDSTGFT DKLENINKPL 180
181 IDKKGQVLRN FTLVDKRQQL QQKVRGYGQY GPTMSVEEFL DKEFEEGRVL QGGEEPEQAP 240
241 DEENMDWQDR ETYKAREWDE FKESHAKGSG NTMNRG
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.564 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.359 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.310 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.284 | a.74.1 | Cyclin-like |
| View | Download | 0.283 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
