| Protein: | YML133C |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1374 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YML133C.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [274..1374] | [124..1224] |
|
|
0.0 | [274..1374] | [582..1681] |
|
Region A: Residues: [1-209] |
1 11 21 31 41 51
| | | | | |
1 MKVSDRRKFE KANFDEFESA LNNKNDLVHC PSITLFESIP TEVRSFYEDE KSGLIKVVKF 60
61 RTGAMDRKRS FEKIVVSVMV GKNVQKFLTF VEDEPDFQGG PIPSKYLIPK KINLMVYTLF 120
121 QVHTLKFNRK DYDTLSLFYL NRGYYNELSF RVLERCHEIA SARPNDSSTM RTFTDFVSGA 180
181 PIVRSLQKST IRRYGYNLAP HMFLLLHVD
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [210-302] |
1 11 21 31 41 51
| | | | | |
1 ELSIFSAYQA SLPGEKKVDT ERLKRDLCPR KPIEIKYFSQ ICNDMMNKKD RLGDVLATAQ 60
61 RIRRRYNKNS SSEPRLKTLD GLTSERWIQW LGL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.901 | 0.003 | helicase activity | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.443 | 0.000 | helicase activity | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.436 | 0.000 | helicase activity | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.476 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.425 | N/A | N/A | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.379 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.349 | N/A | N/A | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.344 | N/A | N/A | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.337 | N/A | N/A | a.118.14 | FliG |
| View | Download | 0.335 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.334 | N/A | N/A | a.101.1 | Uteroglobin-like |
| View | Download | 0.332 | N/A | N/A | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.318 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.309 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.307 | N/A | N/A | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.295 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.290 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.290 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.288 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.285 | N/A | N/A | a.21.1 | HMG-box |
| View | Download | 0.282 | N/A | N/A | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.278 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.268 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.267 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.265 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.261 | N/A | N/A | a.49.1 | C-terminal domain of B transposition protein |
| View | Download | 0.251 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.248 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.246 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.246 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.234 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.230 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.230 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.228 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.227 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.225 | N/A | N/A | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.222 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.215 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.214 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.213 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.209 | N/A | N/A | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.204 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [303-789] |
1 11 21 31 41 51
| | | | | |
1 ESDYHCSFSS TRNAEDVVAG EAASSDHHQK ISRVTRKRPR EPKSTNDILV AGQKLFGSSF 60
61 EFRDLHQLRL CHEIYMADTP SVAVQAPPGY GKTELFHLPL IALASKGDVK YVSFLFVPYT 120
121 VLLANCMIRL SRCGCLNVAP VRNFIEEGCD GVTDLYVGIY DDLASTNFTD RIAAWENIVE 180
181 CTFRTNNVKL GYLIVDEFHN FETEVYRQSQ FGGITNLDFD AFEKAIFLSG TAPEAVADAA 240
241 LQRIGLTGLA KKSMDINELK RSEDLSRGLS SYPTRMFNLI KEKSEVPLGH VHKIWKKVES 300
301 QPEEALKLLL ALFEIEPESK AIVVASTTNE VEELACSWRK YFRVVWIHGK LGAAEKVSRT 360
361 KEFVTDGSMR VLIGTKLVTE GIDIKQLMMV IMLDNRLNII ELIQGVGRLR DGGLCYLLSR 420
421 KNSWAARNRK GELPPIKEGC ITEQVREFYG LESKKGKKGQ HVGCCGSRTD LSADTVELIE 480
481 RMDRLAE
|
| Detection Method: | |
| Confidence: | 163.9897 |
| Match: | 1fuuA_ |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [790-877] |
1 11 21 31 41 51
| | | | | |
1 KQATASMSIV ALPSSFQESN SSDRCRKYCS SDEDSDTCIH GSANASTNAT TNSSTNATTT 60
61 ASTNVRTSAT TTASINVRTS ATTTESTN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.362 | a.77.1 | DEATH domain |
| View | Download | 0.299 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.445 | a.64.1 | Saposin |
| View | Download | 0.363 | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.298 | a.64.1 | Saposin |
| View | Download | 0.268 | b.36.1 | PDZ domain-like |
| View | Download | 0.243 | a.3.1 | Cytochrome c |
| View | Download | 0.238 | a.77.1 | DEATH domain |
| View | Download | 0.230 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.224 | d.15.4 | 2Fe-2S ferredoxin-like |
|
Region A: Residues: [878-1002] |
1 11 21 31 41 51
| | | | | |
1 SSTNATTTAS TNVRTSATTT ASINVRTSAT TTESTNSNTS ATTTESTDSN TSATTTESTD 60
61 SNTSATTTAS TNSSTNATTT ASTNSSTNAT TTESTNASAK EDANKDGNAE DNRFHPVTDI 120
121 NKESY
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1ezgA_ |
| Description: | Insect cysteine-rich antifreeze protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1003-1374] |
1 11 21 31 41 51
| | | | | |
1 KRKGSQMVLL ERKKLKAQFP NTSENMNVLQ FLGFRSDEIK HLFLYGIDIY FCPEGVFTQY 60
61 GLCKGCQKMF ELCVCWAGQK VSYRRMAWEA LAVERMLRND EEYKEYLEDI EPYHGDPVGY 120
121 LKFFSVKRGE IYSQIQRNYA WYLAITRRRE TISVLDSTRG KQGSQVFRMS GRQIKELYYK 180
181 VWSNLRESKT EVLQYFLNWD EKKCREEWEA KDDTVFVEAL EKVGVFQRLR SMTSAGLQGP 240
241 QYVKLQFSRH HRQLRSRYEL SLGMHLRDQL ALGVTPSKVP HWTAFLSMLI GLFYNKTFRQ 300
301 KLEYLLEQIS EVWLLPHWVD LANVEVLAAD NTRVPLYMLM VAVHKELDSD DVPDGRFDII 360
361 LLCRDSSREV GE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1277-1374] |
1 11 21 31 41 51
| | | | | |
1 TPSKVPHWTA FLSMLIGLFY NKTFRQKLEY LLEQISEVWL LPHWVDLANV EVLAADNTRV 60
61 PLYMLMVAVH KELDSDDVPD GRFDIILLCR DSSREVGE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
