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View Structure Prediction Details

Protein: ZDS2
Organism: Saccharomyces cerevisiae
Length: 942 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ZDS2.

Description E-value Query
Range
Subject
Range
gi|1236327 - gi|1236327|gb|AAB37541.1| Mcs1p
1470.0 [0..1] [913..1]
gi|226590 - gi|226590|prf||1603238A ATP synthase 18kD-like protein 52
1201.0 [0..136] [883..4]
gi|45184639, gi|... - gi|45184639|ref|NP_982357.1| AAL185Wp [Ashbya gossypii ATCC 10895], gi|44979985|gb|AAS50181.1| AAL18...
gi|44979985 - gi|44979985|gb|AAS50181.1| AAL185Wp [Ashbya gossypii ATCC 10895]
381.0 [0..42] [912..67]
gi|50287377, gi|... - gi|50287377|ref|XP_446118.1| unnamed protein product [Candida glabrata], gi|49525425|emb|CAG59042.1|...
gi|49525425 - gi|49525425|emb|CAG59042.1| unnamed protein product [Candida glabrata]
349.0 [0..48] [911..4]

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Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLMEDMQNK DGHNTVENSS GGTDSNNNIQ MRRMRKTQLS KKELFEKRKS DVLIAAKSLD  60
   61 TEIQNVKNLK RLSIGSMDLV IDPELEFKVN SRNSYSSDSS KESLQESLHE ENIIRSEQKE 120
  121 EQGSEDNDAY E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [132-516]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGDATNVDDS IDITQTEYLH DEETLEKEKI IRNASSSTSS SARVTSRNRR LSGVKTLAHD  60
   61 VVLDVENDHD SKMVDLTQNL LWVPADQHPN VKPENYLELI QDTLQNIQIS TNQDIDENKL 120
  121 ELGNNHVISN RKRTGSVVRR PSRLKTSYTK FDDEPPLADK PQEGEIQVDK RISSSDIKTI 180
  181 RSVSLKEITE ELTKISNNAG LTDSDAVTLA RSLSMSGSFT NESLHLNGNH TENDNEFASN 240
  241 MFNETGLTIP ERSSLRRSKF NTYKIRLEGS SLPQAVKLNS LMNIQTNDNR RSASSPASYT 300
  301 QVPQEQASLN DFHEIFDHYR RTSTDWSTEN EKYVDSTNYY SDEEDLTHAS ISQESSLLST 360
  361 DSSNNSVLIK PHNTGSMISE KLDQH

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 11.32
Match:
Description: No description for 1jv2B was found.

Predicted Domain #3
Region A:
Residues: [517-600]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSSSEKSNTN NSEANHGWSW LNSSNGSLNA NEQTYQQLTD DEDDEECVDN EKADFVNLSV  60
   61 SRRAKSTKRA SERINHSKNR HSPI

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 11.32
Match:
Description: No description for 1jv2B was found.

Predicted Domain #4
Region A:
Residues: [601-819]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQIHSEEAKS VVITPSVVSS SESQPSKPTA PAVVEKKVEL PTDTQASTHK KNSLEKRLAK  60
   61 LFKRKQHNGT CKSDVKVIKK SVKKELKKKA SHSSLSKFRK SPKKKPQEAE VERPSSPTKT 120
  121 ITTEDIDTAS VIEPEVRSSN ASTLLPDSHT SHSSEFVVET ISELDGDDSF DISGGDVNYD 180
  181 VEVHSSISRD TTAGLEEDIG AEREDNTSPT APQISTLPP

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 13.87
Match:
Description: No description for 1m2vB was found.

Predicted Domain #5
Region A:
Residues: [820-942]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKLTFEDVVK PDYSNAPIKF TDSAFGFPLP MITNSTVIMF DHRLGINVER AIYRLSHLKL  60
   61 SDPGRELRQQ VLLSNFMYSY LNLVNHTLYM EQVGTGDIAF NGDSALGMMD KNDSDGTILI 120
  121 PDI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle