| Protein: | MDM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1127 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDM1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1127] | [1..1127] |
|
|
0.0 | [23..1107] | [41..1103] |
|
|
0.0 | [7..1123] | [7..999] |
|
|
0.0 | [9..1122] | [60..1004] |
|
|
0.0 | [4..575] | [81..576] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MPKFPQFRLI LVLFYLISMI QWSVITFSLG FFLNVCIFAY FVFFKSLPDL PKPQPRFVDI 60
61 VPESSNTVDV DKELKSVEGL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [81-294] |
1 11 21 31 41 51
| | | | | |
1 IQDGNAQIGK ELESIVNLII KDFVQPWFTK IDKNSDAEFL KVIKWRLLQT LLVVKDKLMK 60
61 NDSASLIVLK LLPIFNKHFS TFCDAREAVL SDLTLERHKS ANIDLQIAVE FNKNYKIHKS 120
121 LSLKPNALQK EIEKSIRKTV IGLLPHLFDN DELDSLLVFT LMTEVLTTCI ISPLIFKFTD 180
181 PDSWNLRIVS LSQNYFEEKH KVHKIRRMLS KELQ
|
| Detection Method: | |
| Confidence: | 97.568636 |
| Match: | PF02194 |
| Description: | PXA domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [295-388] |
1 11 21 31 41 51
| | | | | |
1 DHRKVMNDVA NKDVGEPSSE KLELNAEYTG KQFEHYLNQL DSLLDLSDIK YVAYSLALKI 60
61 YQLKENEHLT KENLKYKKRL LLSLNLIESK LSFP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.906 | 0.010 | mitochondrion inheritance | a.7.6 | Ribosomal protein S20 |
|
Region A: Residues: [389-607] |
1 11 21 31 41 51
| | | | | |
1 GSEIDTASKK LAREANYPDL NMDNGIVLKE MASFLTSITL KDIVDDSEFL PFFESFLGSV 60
61 PETQGSTFLE YSQTIESFKN PLEDATSEDI ISGYSGISTM QLQEISSKFF HNNNLQNMKL 120
121 LDEGLVKNII LFRNSFQINN DEDTFILARK SVLLLQTEAI KYLDDRFLPL FKKTPSFLKM 180
181 LSTSHIISTD IYAHFLSRIG GVNNPEQNKI IKDNVKTDF
|
| Detection Method: | |
| Confidence: | 12.29 |
| Match: | 1agrE |
| Description: | Regulator of G-protein signalling 4, RGS4 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.74066926539061 | bayes_pls_golite062009 |
| protein binding | 1.46874099847386 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 0.751540543950607 | bayes_pls_golite062009 |
| GTPase regulator activity | 0.726313915060022 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.619424511001805 | bayes_pls_golite062009 |
| enzyme activator activity | 0.423538625413241 | bayes_pls_golite062009 |
| GTPase activator activity | 0.380332469241193 | bayes_pls_golite062009 |
| calmodulin binding | 0.144645492942361 | bayes_pls_golite062009 |
|
Region A: Residues: [608-696] |
1 11 21 31 41 51
| | | | | |
1 MNPVRIFANP GITDALDNIV NGSGSKPHKS RISSNPRYSQ LFGSENDNIF KDKLFDDEND 60
61 NTSEISVVED QLDHPRNMEK VSVSSGNSG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.392 | 0.882 | mitochondrion inheritance | a.39.1 | EF-hand |
|
Region A: Residues: [697-920] |
1 11 21 31 41 51
| | | | | |
1 LNPSQFYGSN NFRDNIASLT ISIDQIEKEL ELLRHLILKA DLTNNQMQLK ILKKSQRTLL 60
61 KELEMKELLK QQYMVQENGN SLFRKTKIYI RSYFSENSSN GLKEITYYII NIHHFNNGQV 120
121 SSWDMARRYN EFFELNTYLK KNFRDLMRQL QDLFPSKVKM SLKYHVTKTL LYEERKQKLE 180
181 KYLRELLSIS EICEDNIFRR FLTDPTPFKL NKEYMHDDIL EEPL
|
| Detection Method: | |
| Confidence: | 22.154902 |
| Match: | 1h6hA_ |
| Description: | p40phox NADPH oxidase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [921-1127] |
1 11 21 31 41 51
| | | | | |
1 HEPIGSSNST SNSSSVVDLQ SSEDGGELNF YEDERHFFTD SGYPFYSQNK SFVKQICDLF 60
61 ISLFALNKAN AGWLRGRAII TVLQQLLGST IEKYIKVSIQ KLRSEDQVFE AIVTFKNMLW 120
121 GDNGLFERKR NETAEATRSE GERLRTEQLA LTSLQRLFAD TCGRVVGLRD SHEAAGRVHA 180
181 MLQNPYLNAS LLLEALDAIL LDIICND
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
