| Protein: | NUP188 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1655 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP188.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [269..1586] | [301..1559] |
|
|
0.0 | [1..1655] | [1..1655] |
|
|
0.0 | [269..1648] | [301..1601] |
|
|
0.004 | [518..1073] | [507..1039] |
|
Region A: Residues: [1-1655] |
1 11 21 31 41 51
| | | | | |
1 MATPSFGNSS PQLTFTHVAN FMNDAAADVS AVDAKQLAQI RQFLKANKTN LIESLNTIRQ 60
61 NVTSSGDHNK LRSTIANLLQ INVDNDPFFA QSEDLSHAVE FFMSERSSRL HIVYSLLVNP 120
121 DIDLETYSFI DNDRFNVVGK LISIISSVIQ NYDIITASSL AHDYNNDQDM FTIVSLVQLK 180
181 KFSDLKFILQ ILQILNLMIL NTKVPVDIVN QWFLQYQNQF VEFCRNINST DKSIDTSSLQ 240
241 LYKFQNFQDL SYLSETLISR ISSLFTITTI LILGLNTSIA QFDIQSPLYM DTETFDTVNS 300
301 ALENDVATNI VNEDPIFHPM IHYSWSFILY YRRALQSSES FDDSDITKFA LFAESHDVLQ 360
361 KLNTLSEILS FDPVYTTVIT VFLEFSLNFI PITASTSRVF AKIISKAPEQ FIENFLTNDT 420
421 FEKKLSIIKA KLPLLNESLI PLINLALIDT EFANFELKDI CSFAVTKSSL NDLDYDLIAD 480
481 TITNSSSSSD IIVPDLIELK SDLLVAPPLE NENSNCLLSI PKSTKGKILT IKQQQQQQQQ 540
541 QNGQQPPTTS NLIIFLYKFN GWSLVGRILQ NLLHSYMEKG TQLDDLQHEL MISIIKLVTN 600
601 VVDPKTSIEK SSEILSYLSN SLDTSASTIN GASIIQVIFE IFEISLQRKD YTSIVQCCEF 660
661 MTMLTPNYLH LVSSYLNKSD LLDKYGKTGL SNMILGSVEL STGDYTFTIQ LLKLTKVFIR 720
721 ESLSLKNIHI SKRSKIDIIN KLILHAIHIF ESYYNWKYNN FLQKFEIAFH LTLIFYDVLH 780
781 DVFTINPHQK DQLIISSSAN KLLQLFLTPM DSIDLAPNTL TNILISPLNT TTKILGDKIL 840
841 GNLYSKVMNN SFKLCTLLIA IRGSNRDLKP SNLEKLLFIN SSKLVDVYTL PSYVHFKVQI 900
901 IELLSYLVEA PWNDDYPFLL SFLGEAKSMA FLKEVLSDLS SPVQDWNLLR SLYIFFTTLL 960
961 ESKQDGLSIL FLTGQFASNK KINDESSIDK KSSILTVLQK NSLLLDSTPE EVSCKLLETI1020
1021 TYVLNTWTNS KIFIKDPKFV NSLLAKLKDS KKLFQKKENL TRDETVSLIK KYKLISRIVE1080
1081 IFALCIYNST DSNSEILNFL NQEDLFELVH HFFQIDGFNK TFHDELNLKF KEKWPSLELQ1140
1141 SFQKIPLSRI NENENFGYDI PLLDIVLKAD RSWNEPSKSQ TNFKEEITDA SLNLQYVNYE1200
1201 ISTAKAWGAL ITTFVKRSTV PLNDGFVDLV EHFLKLNIDF GSDKQMFTQI YLERIELSFY1260
1261 ILYSFKLSGK LLKEEKIIEL MNKIFTIFKS GEIDFIKNIG KSLKNNFYRP LLRSVLVLLE1320
1321 LVSSGDRFIE LISDQLLEFF ELVFSKGVYL ILSEILCQIN KCSTRGLSTD HTTQIVNLED1380
1381 NTQDLLLLLS LFKKITNVNP SKNFNVILAS SLNEVGTLKV ILNLYSSAHL IRINDEPILG1440
1441 QITLTFISEL CSIEPIAAKL INSGLYSVLL ESPLSVAIQQ GDIKPEFSPR LHNIWSNGLL1500
1501 SIVLLLLSQF GIKVLPETCL FVSYFGKQIK STIYNWGDNK LAVSSSLIKE TNQLVLLQKM1560
1561 LNLLNYQELF IQPKNSDDQQ EAVELVIGLD SEHDKKRLSA ALSKFLTHPK YLNSRIIPTT1620
1621 LEEQQQLEDE SSRLEFVKGI SRDIKALQDS LFKDV
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [183-406] |
1 11 21 31 41 51
| | | | | |
1 SDLKFILQIL QILNLMILNT KVPVDIVNQW FLQYQNQFVE FCRNINSTDK SIDTSSLQLY 60
61 KFQNFQDLSY LSETLISRIS SLFTITTILI LGLNTSIAQF DIQSPLYMDT ETFDTVNSAL 120
121 ENDVATNIVN EDPIFHPMIH YSWSFILYYR RALQSSESFD DSDITKFALF AESHDVLQKL 180
181 NTLSEILSFD PVYTTVITVF LEFSLNFIPI TASTSRVFAK IISK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [407-513] |
1 11 21 31 41 51
| | | | | |
1 APEQFIENFL TNDTFEKKLS IIKAKLPLLN ESLIPLINLA LIDTEFANFE LKDICSFAVT 60
61 KSSLNDLDYD LIADTITNSS SSSDIIVPDL IELKSDLLVA PPLENEN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [514-603] |
1 11 21 31 41 51
| | | | | |
1 SNCLLSIPKS TKGKILTIKQ QQQQQQQQNG QQPPTTSNLI IFLYKFNGWS LVGRILQNLL 60
61 HSYMEKGTQL DDLQHELMIS IIKLVTNVVD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [604-786] |
1 11 21 31 41 51
| | | | | |
1 PKTSIEKSSE ILSYLSNSLD TSASTINGAS IIQVIFEIFE ISLQRKDYTS IVQCCEFMTM 60
61 LTPNYLHLVS SYLNKSDLLD KYGKTGLSNM ILGSVELSTG DYTFTIQLLK LTKVFIRESL 120
121 SLKNIHISKR SKIDIINKLI LHAIHIFESY YNWKYNNFLQ KFEIAFHLTL IFYDVLHDVF 180
181 TIN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [787-864] |
1 11 21 31 41 51
| | | | | |
1 PHQKDQLIIS SSANKLLQLF LTPMDSIDLA PNTLTNILIS PLNTTTKILG DKILGNLYSK 60
61 VMNNSFKLCT LLIAIRGS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [865-1050] |
1 11 21 31 41 51
| | | | | |
1 NRDLKPSNLE KLLFINSSKL VDVYTLPSYV HFKVQIIELL SYLVEAPWND DYPFLLSFLG 60
61 EAKSMAFLKE VLSDLSSPVQ DWNLLRSLYI FFTTLLESKQ DGLSILFLTG QFASNKKIND 120
121 ESSIDKKSSI LTVLQKNSLL LDSTPEEVSC KLLETITYVL NTWTNSKIFI KDPKFVNSLL 180
181 AKLKDS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1051-1175] |
1 11 21 31 41 51
| | | | | |
1 KKLFQKKENL TRDETVSLIK KYKLISRIVE IFALCIYNST DSNSEILNFL NQEDLFELVH 60
61 HFFQIDGFNK TFHDELNLKF KEKWPSLELQ SFQKIPLSRI NENENFGYDI PLLDIVLKAD 120
121 RSWNE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1176-1378] |
1 11 21 31 41 51
| | | | | |
1 PSKSQTNFKE EITDASLNLQ YVNYEISTAK AWGALITTFV KRSTVPLNDG FVDLVEHFLK 60
61 LNIDFGSDKQ MFTQIYLERI ELSFYILYSF KLSGKLLKEE KIIELMNKIF TIFKSGEIDF 120
121 IKNIGKSLKN NFYRPLLRSV LVLLELVSSG DRFIELISDQ LLEFFELVFS KGVYLILSEI 180
181 LCQINKCSTR GLSTDHTTQI VNL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1379-1655] |
1 11 21 31 41 51
| | | | | |
1 EDNTQDLLLL LSLFKKITNV NPSKNFNVIL ASSLNEVGTL KVILNLYSSA HLIRINDEPI 60
61 LGQITLTFIS ELCSIEPIAA KLINSGLYSV LLESPLSVAI QQGDIKPEFS PRLHNIWSNG 120
121 LLSIVLLLLS QFGIKVLPET CLFVSYFGKQ IKSTIYNWGD NKLAVSSSLI KETNQLVLLQ 180
181 KMLNLLNYQE LFIQPKNSDD QQEAVELVIG LDSEHDKKRL SAALSKFLTH PKYLNSRIIP 240
241 TTLEEQQQLE DESSRLEFVK GISRDIKALQ DSLFKDV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
