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View Structure Prediction Details

Protein: RAD10
Organism: Saccharomyces cerevisiae
Length: 210 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD10.

Description E-value Query
Range
Subject
Range
RAD10_YEAST - DNA repair protein RAD10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD10 PE=1 SV=1
gi|151946071 - gi|151946071|gb|EDN64302.1| ssDNA endonuclease [Saccharomyces cerevisiae YJM789]
gi|190408151 - gi|190408151|gb|EDV11416.1| ssDNA endonuclease [Saccharomyces cerevisiae RM11-1a]
gi|207342581 - gi|207342581|gb|EDZ70306.1| YML095Cp-like protein [Saccharomyces cerevisiae AWRI1631]
RAD10 - Single-stranded DNA endonuclease (with Rad1p), cleaves single-stranded DNA during nucleotide excisio...
4.0E-85 [1..210] [1..210]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
2.0E-65 [43..209] [54..213]
gi|61363050, gi|... - gi|61363050|gb|AAX42326.1| excision repair cross-complementing rodent repair deficiency complementat...
ERCC1 - excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes over...
5.0E-65 [43..209] [54..213]
ERCC1_MOUSE - DNA excision repair protein ERCC-1 OS=Mus musculus GN=Ercc1 PE=2 SV=2
2.0E-63 [45..209] [56..213]
gi|6576543 - gi|6576543|dbj|BAA88319.1| ERCC1 [Cricetulus griseus]
2.0E-57 [44..209] [50..208]
ERCC1_ARATH - DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1 PE=2 SV=1
6.0E-56 [44..210] [77..239]
gi|3297891 - gi|3297891|emb|CAA05781.1| nucleotide repair protein [Lilium longiflorum]
6.0E-51 [72..210] [12..146]
gi|3845112, gi|1... - gi|3845112|gb|AAC71822.1| ERCC1 nucleotide excision repair protein, putative [Plasmodium falciparum ...
gi|7494159 - pir||E71621 ERCC1-like excision repair protein PFB0160w - malaria parasite (Plasmodium falciparum)
3.0E-48 [48..210] [3..161]
Ercc1-PA - The gene Ercc1 is referred to in FlyBase by the symbol Dmel\Ercc1 (CG10215, FBgn0028434). It is a pr...
1.0E-46 [51..209] [19..176]

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Predicted Domain #1
Region A:
Residues: [1-73]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNTDPTSFE SILAGVAKLR KEKSGADTTG SQSLEIDASK LQQQEPQTSR RINSNQVINA  60
   61 FNQQKPEEWT DSK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.722 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.869 a.112.1 Description not found.
View Download 0.869 a.112.1 Description not found.
View Download 0.757 a.112.1 Description not found.
View Download 0.722 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.710 a.112.1 Description not found.
View Download 0.673 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.673 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.613 a.4.5 "Winged helix" DNA-binding domain
View Download 0.518 a.4.1 Homeodomain-like
View Download 0.501 a.44.1 Disulphide-bond formation facilitator (DSBA), insertion domain
View Download 0.476 a.58.1 Chemotaxis receptor methyltransferase CheR, N-terminal domain
View Download 0.461 a.39.1 EF-hand
View Download 0.442 a.60.9 lambda integrase-like, N-terminal domain
View Download 0.429 a.4.1 Homeodomain-like
View Download 0.427 a.159.2 FF domain
View Download 0.422 a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.405 a.4.1 Homeodomain-like
View Download 0.400 a.179.1 Replisome organizer (g39p helicase loader/inhibitor protein)
View Download 0.378 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.372 a.4.1 Homeodomain-like
View Download 0.360 a.21.1 HMG-box
View Download 0.357 a.60.4 DNA repair protein Rad51, N-terminal domain
View Download 0.356 a.64.1 Saposin
View Download 0.334 a.177.1 Sigma2 domain of RNA polymerase sigma factors
View Download 0.333 a.69.3 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
View Download 0.329 a.3.1 Cytochrome c
View Download 0.329 a.16.1 S15/NS1 RNA-binding domain
View Download 0.322 d.54.1 Enolase N-terminal domain-like
View Download 0.321 d.29.1 Ribosomal protein L31e
View Download 0.307 a.76.1 Iron-dependent represor protein, dimerization domain
View Download 0.305 a.3.1 Cytochrome c
View Download 0.298 a.163.1 Crustacean CHH/MIH/GIH neurohormone
View Download 0.293 a.60.3 C-terminal domain of RNA polymerase alpha subunit
View Download 0.284 g.63.1 Mollusk pheromone
View Download 0.278 a.21.1 HMG-box
View Download 0.274 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.272 a.3.1 Cytochrome c
View Download 0.261 a.4.5 "Winged helix" DNA-binding domain
View Download 0.261 a.181.1 Antibiotic binding domain of TipA-like multidrug resistance regulators
View Download 0.261 a.20.1 PGBD-like
View Download 0.251 a.126.1 Serum albumin-like
View Download 0.241 a.112.1 Description not found.
View Download 0.237 a.74.1 Cyclin-like
View Download 0.232 a.142.1 PTS-regulatory domain, PRD
View Download 0.225 a.150.1 Anti-sigma factor AsiA
View Download 0.225 a.44.1 Disulphide-bond formation facilitator (DSBA), insertion domain
View Download 0.217 a.17.1 p8-MTCP1
View Download 0.213 a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.208 a.13.1 alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View Download 0.202 c.47.1 Thioredoxin-like
View Download 0.200 a.159.1 Protein serine/threonine phosphatase 2C, C-terminal domain

Predicted Domain #2
Region A:
Residues: [74-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATDDYNRKRP FRSTRPGKTV LVNTTQKENP LLNHLKSTNW RYVSSTGINM IYYDYLVRGR  60
   61 SVLFLTLTYH KLYVDYISRR MQPLSRNENN ILIFIVDDNN SEDTLNDITK LCMFNGFTLL 120
  121 LAFNFEQAAK YIEYLNL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 44.853872
Match: PF03834
Description: DNA repair protein rad10

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle