| Protein: | RAD10 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 210 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD10.
| Description | E-value | Query Range |
Subject Range |
|
|
4.0E-85 | [1..210] | [1..210] |
|
|
2.0E-65 | [43..209] | [54..213] |
|
|
5.0E-65 | [43..209] | [54..213] |
|
|
2.0E-63 | [45..209] | [56..213] |
|
|
2.0E-57 | [44..209] | [50..208] |
|
|
6.0E-56 | [44..210] | [77..239] |
|
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6.0E-51 | [72..210] | [12..146] |
|
|
3.0E-48 | [48..210] | [3..161] |
|
|
1.0E-46 | [51..209] | [19..176] |
|
Region A: Residues: [1-73] |
1 11 21 31 41 51
| | | | | |
1 MNNTDPTSFE SILAGVAKLR KEKSGADTTG SQSLEIDASK LQQQEPQTSR RINSNQVINA 60
61 FNQQKPEEWT DSK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.722 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.869 | a.112.1 | Description not found. |
| View | Download | 0.869 | a.112.1 | Description not found. |
| View | Download | 0.757 | a.112.1 | Description not found. |
| View | Download | 0.722 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.710 | a.112.1 | Description not found. |
| View | Download | 0.673 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.673 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.613 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.518 | a.4.1 | Homeodomain-like |
| View | Download | 0.501 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.476 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.461 | a.39.1 | EF-hand |
| View | Download | 0.442 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.429 | a.4.1 | Homeodomain-like |
| View | Download | 0.427 | a.159.2 | FF domain |
| View | Download | 0.422 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.405 | a.4.1 | Homeodomain-like |
| View | Download | 0.400 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.378 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.372 | a.4.1 | Homeodomain-like |
| View | Download | 0.360 | a.21.1 | HMG-box |
| View | Download | 0.357 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.356 | a.64.1 | Saposin |
| View | Download | 0.334 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.333 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.329 | a.3.1 | Cytochrome c |
| View | Download | 0.329 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.322 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.321 | d.29.1 | Ribosomal protein L31e |
| View | Download | 0.307 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.305 | a.3.1 | Cytochrome c |
| View | Download | 0.298 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.293 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.284 | g.63.1 | Mollusk pheromone |
| View | Download | 0.278 | a.21.1 | HMG-box |
| View | Download | 0.274 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.272 | a.3.1 | Cytochrome c |
| View | Download | 0.261 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.261 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.261 | a.20.1 | PGBD-like |
| View | Download | 0.251 | a.126.1 | Serum albumin-like |
| View | Download | 0.241 | a.112.1 | Description not found. |
| View | Download | 0.237 | a.74.1 | Cyclin-like |
| View | Download | 0.232 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.225 | a.150.1 | Anti-sigma factor AsiA |
| View | Download | 0.225 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.217 | a.17.1 | p8-MTCP1 |
| View | Download | 0.213 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.208 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.202 | c.47.1 | Thioredoxin-like |
| View | Download | 0.200 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
|
Region A: Residues: [74-210] |
1 11 21 31 41 51
| | | | | |
1 ATDDYNRKRP FRSTRPGKTV LVNTTQKENP LLNHLKSTNW RYVSSTGINM IYYDYLVRGR 60
61 SVLFLTLTYH KLYVDYISRR MQPLSRNENN ILIFIVDDNN SEDTLNDITK LCMFNGFTLL 120
121 LAFNFEQAAK YIEYLNL
|
| Detection Method: | |
| Confidence: | 44.853872 |
| Match: | PF03834 |
| Description: | DNA repair protein rad10 |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
