YRC Public Data Repository - Protein Structure Prediction

Protein:	UTP14
Organism:	Saccharomyces cerevisiae
Length:	899 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTP14.

Description	E-value	Query Range	Subject Range
UTP14_YEAST - U3 small nucleolar RNA-associated protein 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c... UTP14 - Subunit of U3-containing Small Subunit (SSU) processome complex involved in production of 18S rRNA a...	0.0	[1..899]	[1..899]
gi\|9759354, gi\|1... - gi\|9759354\|dbj\|BAB10009.1\| unnamed protein product [Arabidopsis thaliana], gi\|15242319\|ref\|NP_196477...	4.0E-83	[81..895]	[12..797]
gi\|8163674 - gi\|8163674\|gb\|AAF73795.1\|AF154026_1 surface protein PspC [Streptococcus pneumoniae]	7.0E-71	[363..789]	[42..469]
YDM6_SCHPO - Uncharacterized protein C57A7.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC57A7.... SPAC57A7.06 - U3 snoRNP protein Utp14	4.0E-67	[1..897]	[10..928]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-61	[1..785]	[149..949]
gi\|25509405, gi\|... - gi\|8163644\|gb\|AAF73779.1\| surface protein PspC [Streptococcus pneumoniae], pir\|\|H98120 choline bindi... gi\|15459699, gi\|... - gi\|15904036\|ref\|NP_359586.1\| choline binding protein A [Streptococcus pneumoniae R6], gi\|15459699\|gb... gi\|116515359, gi... - gi\|8163644\|gb\|AAF73779.1\|AF154012_1 surface protein PspC [Streptococcus pneumoniae], gi\|116515359\|re...	1.0E-61	[362..789]	[41..478]

Back

Predicted Domain #1

Region A:
Residues: [1-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKKSKSRS KSSRRVLDAL QLAEREINGE FDNSSDNDKR HDARRNGTVV NLLKRSKGDT  60
   61 NSDEDDIDSE SFEDEELNSD EALGSDDDYD ILNSKFSQTI RDKKENANYQ EEEDEGGYTS 120
  121 IDEEDLMPLS QVWDMDEKTA QSNGNDDEDA SPQLKLQDTD ISSESSSSEE SESESEDDEE 180
  181 EEDPFDEISE DEEDIELNTI TSKLIDETKS KAPKRLDTYG SGEANEYVLP SANAASGASG 240
  241 KLSLTDMMNV IDDRQVIENA NLLKGKSSTY EVPLPQRIQQ RHDRKAAYEI SRQEVSKWND 300
  301 IVQQNRRADH LIFPLNKPTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.522879
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [321-816]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNHASAFTRT QDVPQTELQE KVDQVLQESN LANPEKDSKF EELSTAKMTP EEMRKRTTEM  60
   61 RLMRELMFRE ERKARRLKKI KSKTYRKIKK KELMKNRELA AVSSDEDNED HDIARAKERM 120
  121 TLKHKTNSKW AKDMIKHGMT NDAETREEME EMLRQGERLK AKMLDRNSDD EEDGRVQTLS 180
  181 DVENEEKENI DSEALKSKLG KTGVMNMAFM KNGEAREREA NKETLRQLRA VENGDDIKLF 240
  241 ESDEEETNGE NIQINKGRRI YTPGSLESNK DMNELNDHTR KENKVDESRS LENRLRAKNS 300
  301 GQSKNARTNA EGAIIVEEES DGEPLQDGQN NQQDEEAKDV NPWLANESDE EHTVKKQSSK 360
  361 VNVIDKDSSK NVKAMNKMEK AELKQKKKKK GKSNDDEDLL LTADDSTRLK IVDPYGGSDD 420
  421 EQGDNVFMFK QQDVIAEAFA GDDVVAEFQE EKKRVIDDED DKEVDTTLPG WGEWAGAGSK 480
  481 PKNKKRKFIK KVKGVV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [817-899]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKDKRRDKNL QNVIINEKVN KKNLKYQSSA VPFPFENREQ YERSLRMPIG QEWTSRASHQ  60
   61 ELIKPRIMTK PGQVIDPLKA PFK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.221	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70

Predicted Domain #4

Region A:
Residues: [643-762]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPLQDGQNNQ QDEEAKDVNP WLANESDEEH TVKKQSSKVN VIDKDSSKNV KAMNKMEKAE  60
   61 LKQKKKKKGK SNDDEDLLLT ADDSTRLKIV DPYGGSDDEQ GDNVFMFKQQ DVIAEAFAGD 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [763-899]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVVAEFQEEK KRVIDDEDDK EVDTTLPGWG EWAGAGSKPK NKKRKFIKKV KGVVNKDKRR  60
   61 DKNLQNVIIN EKVNKKNLKY QSSAVPFPFE NREQYERSLR MPIGQEWTSR ASHQELIKPR 120
  121 IMTKPGQVID PLKAPFK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.221	N/A	N/A	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits