YRC Public Data Repository - Protein Structure Prediction

Protein:	POB3
Organism:	Saccharomyces cerevisiae
Length:	552 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POB3.

Description	E-value	Query Range	Subject Range
gi\|207342538 - gi\|207342538\|gb\|EDZ70274.1\| YML069Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408174 - gi\|190408174\|gb\|EDV11439.1\| DNA polymerase delta binding protein [Saccharomyces cerevisiae RM11-1a] POB3_YEAST - FACT complex subunit POB3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POB3 PE=1 SV=1 POB3 - Subunit of the heterodimeric FACT complex (Spt16p-Pob3p), which associates with chromatin via intera... gi\|151946095 - gi\|151946095\|gb\|EDN64326.1\| DNA polymerase delta binding protein [Saccharomyces cerevisiae YJM789]	0.0	[1..552]	[1..552]
gi\|123993967, gi... - gi\|123998313\|gb\|ABM86758.1\| structure specific recognition protein 1 [synthetic construct], gi\|12399... SSRP1 - structure specific recognition protein 1	0.0	[2..530]	[4..485]
gi\|8170740 - gi\|8170740\|gb\|AAB19500.2\| HMG1-related DNA-binding protein [Mus sp.] SSRP_MOUSE, SSRP... - (Q08943) Structure-specific recognition protein 1 (SSRP1) (Recombination signal sequence recognition...	0.0	[2..551]	[4..519]
SSRP1_XENLA - FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1	0.0	[2..544]	[4..496]
SSRP_CHICK, SSRP... - (Q04678) Structure-specific recognition protein 1 (SSRP1) (Recombination signal sequence recognition...	0.0	[44..552]	[2..482]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[5..542]	[7..513]
SSRP1_CATRO - FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1	0.0	[5..552]	[7..523]
SSP1A_ORYSJ - FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica GN=SSRP1-A PE=2 SV=1 SSP1A_ORYSA - FACT complex subunit SSRP1-A (Facilitates chromatin transcription complex subunit SSRP1-A) (Recombin...	0.0	[5..552]	[7..522]
SSRP1_MAIZE - FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1	0.0	[5..541]	[7..514]
SSRP1_ARATH - FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2	0.0	[5..552]	[7..523]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDFDRIYL NQSKFSGRFR IADSGLGWKI STSGGSAANQ ARKPFLLPAT ELSTVQWSRG  60
   61 CRGYDLKINT KNQGVIQLDG FSQDDYNLIK NDFHRRFNIQ VEQREHSLRG WNWGKTDLAR 120
  121 NEMVFALNGK PTFEIPYARI NNTNLTSKNE VGIEFNIQDE EYQPAGDELV EMRFYIPGVI 180
  181 QTNVDENMTK KEESSNEVVP KKEDGAEG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [209-475]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDVQMAVEEK SMAEAFYEEL KEKADIGEVA GDAIVSFQDV FFTTPRGRYD IDIYKNSIRL  60
   61 RGKTYEYKLQ HRQIQRIVSL PKADDIHHLL VLAIEPPLRQ GQTTYPFLVL QFQKDEETEV 120
  121 QLNLEDEDYE ENYKDKLKKQ YDAKTHIVLS HVLKGLTDRR VIVPGEYKSK YDQCAVSCSF 180
  181 KANEGYLYPL DNAFFFLTKP TLYIPFSDVS MVNISRAGQT STSSRTFDLE VVLRSNRGST 240
  241 TFANISKEEQ QLLEQFLKSK NLRVKNE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	139.022276
Match:	PF03531
Description:	Structure-specific recognition protein

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [476-552]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DREVQERLQT ALGSDSDEED INMGSAGEDD ESVDEDFQVS SDNDADEVAE EFDSDAALSD  60
   61 AEGGSDEERP SKKPKVE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.236	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits