YRC Public Data Repository - Protein Structure Prediction

Protein:	RRN11
Organism:	Saccharomyces cerevisiae
Length:	507 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRN11.

Description	E-value	Query Range	Subject Range
gi\|5901751 - gi\|5901751\|gb\|AAD55396.1\| RNA polymerase I-specific transcription initiation factor [Candida glabrat...	761.0	[0..1]	[468..1]
gi\|50291587, gi\|... - gi\|50291587\|ref\|XP_448226.1\| unnamed protein product [Candida glabrata], gi\|49527537\|emb\|CAG61177.1\|... gi\|49527537 - gi\|49527537\|emb\|CAG61177.1\| unnamed protein product [Candida glabrata]	757.0	[0..1]	[468..1]
gi\|50305001, gi\|... - gi\|50305001\|ref\|XP_452458.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641591\|emb\|CAH0130... gi\|49641591 - gi\|49641591\|emb\|CAH01309.1\| KLLA0C05852p [Kluyveromyces lactis]	328.0	[0..1]	[504..1]
gi\|44981423 - gi\|44981423\|gb\|AAS51208.1\| ACL020Wp [Ashbya gossypii ATCC 10895] gi\|44981423, gi\|... - gi\|45185668\|ref\|NP_983384.1\| ACL020Wp [Ashbya gossypii ATCC 10895], gi\|44981423\|gb\|AAS51208.1\| ACL02...	326.0	[0..1]	[507..46]
orf19.8337 - orf19.718 CGDID:CAL0001746 Assembly 19, Contig19-20070 (13745, 15814) CDS, translated using codon ta... gi\|46434578, gi\|... - gi\|68485965\|ref\|XP_713101.1\| potential RNA Pol I transcription factor subunit Rrn11 [Candida albican...	127.0	[0..211]	[438..239]
gi\|49655244, gi\|... - gi\|50422029\|ref\|XP_459576.1\| hypothetical protein DEHA0E06611g [Debaryomyces hansenii CBS767], gi\|49...	122.0	[0..185]	[463..153]
RRN11_SCHPO - RNA polymerase I-specific transcription initiation factor rrn11 OS=Schizosaccharomyces pombe (strain... rrn11 - RNA polymerase I transcription factor subunit Rrn11	116.0	[0..197]	[362..25]
gi\|71001478, gi\|... - gi\|71001478\|ref\|XP_755420.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668530...	56.0	[0..207]	[266..131]
gi\|115384618, gi... - gi\|115384618\|ref\|XP_001208856.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114196548\|gb\|EA...	55.0	[0..188]	[377..111]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEVPITLTN RKFAQRRKLK YQYINYISRR FDRISKKSTT TDSLPTPENS AAENNDEEEG  60
   61 QNSEAGTYRR SVLQQKKRRR ERHWRSVVGE IYSTTESETD SQEEETEEGG EHDTGIDKED 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [121-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDEERKFWKK YEKPEKSFEI WRTVSSQNKQ PINKQKMTYH NFKKIEKIPL RKMEIPLLHC  60
   61 TKENKLYFQS ISRGLEPLKT STSEVRNYRT RHIVTLTDLL HLNVSRHNWS LAYKIFATLI 120
  121 RIPGVQIKSL WGIGVEILDN LSNSSSGLDF LQWMCQIYSS KSRFVQNINY RS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [293-507]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVPPFQTGSR THTAKFAITY LWSSLINCQK SMEPSSNIID KPFDTENDLL QELIDKISEW  60
   61 VLTPPFMEDA EVWFIYASCH LLKADTLSRQ FVNDNKNNDL IGLDRDIKIN QVIKHIHYVR 120
  121 TFLKICLDKG GFAVPSRLIE NQLKSFESRL YGEAQDIQER DVANVYDSID NSSVENSFGD 180
  181 VYETNAEFLD TQLMDLSPED NGLDEMHYSD EDSSE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits