YRC Public Data Repository - Protein Structure Prediction

Protein:	VPS71
Organism:	Saccharomyces cerevisiae
Length:	280 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS71.

Description	E-value	Query Range	Subject Range
gi\|190408202 - gi\|190408202\|gb\|EDV11467.1\| vacuolar protein sorting protein 71 [Saccharomyces cerevisiae RM11-1a] gi\|207342507 - gi\|207342507\|gb\|EDZ70255.1\| YML041Cp-like protein [Saccharomyces cerevisiae AWRI1631] VPS71_YEAST - Vacuolar protein sorting-associated protein 71 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28... VPS71 - Nucleosome-binding component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for c... gi\|151946123 - gi\|151946123\|gb\|EDN64354.1\| vacuolar sorting protein [Saccharomyces cerevisiae YJM789]	0.0	[1..280]	[1..280]
gi\|49527538, gi\|... - gi\|50291589\|ref\|XP_448227.1\| unnamed protein product [Candida glabrata], gi\|49527538\|emb\|CAG61178.1\|... gi\|49527538, gi\|... - gi\|5901753\|gb\|AAD55397.1\| hypothetical protein [Candida glabrata], gi\|49527538\|emb\|CAG61178.1\| unnam...	1.0E-95	[5..280]	[7..271]
SPBC29A3.05 - chromatin remodeling complex subunit VPS71_SCHPO - SWR1 complex subunit vps71 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps71 PE=1 SV=2	3.0E-23	[196..277]	[62..134]
gi\|73957813 - gi\|73957813\|ref\|XP_536855.2\| PREDICTED: similar to Zinc finger HIT domain containing protein 1 (Cycl... ZNHI1_BOVIN - Zinc finger HIT domain-containing protein 1 OS=Bos taurus GN=ZNHIT1 PE=2 SV=1 ENSCJAT00000031181 - null ZNHIT1 - zinc finger, HIT type 1 CCDS5716.1_1 - null gi\|114615130 - gi\|114615130\|ref\|XP_527843.2\| PREDICTED: zinc finger, HIT domain containing 1 [Pan troglodytes] gi\|109066182 - gi\|109066182\|ref\|XP_001107951.1\| PREDICTED: zinc finger, HIT type 1 isoform 2 [Macaca mulatta] gi\|123982920, gi... - gi\|123997601\|gb\|ABM86402.1\| zinc finger, HIT type 1 [synthetic construct], gi\|123982920\|gb\|ABM83201.... gi\|149755986 - gi\|149755986\|ref\|XP_001504511.1\| PREDICTED: similar to Zinc finger HIT domain-containing protein 1 (...	3.0E-12	[186..277]	[66..149]
gi\|12848798, gi\|... - gi\|58037197\|ref\|NP_081594.1\| zinc finger, HIT domain containing 1 [Mus musculus], gi\|26348771\|dbj\|BA... tr\|D3ZNG9\|D3ZNG9_RAT - Uncharacterized protein OS=Rattus norvegicus GN=Znhit1	4.0E-12	[186..277]	[65..148]
SWC6_ARATH - SWR1 complex subunit 6 OS=Arabidopsis thaliana GN=SWC6 PE=1 SV=1	1.0E-11	[186..277]	[73..166]
gi\|12039342 - gi\|12039342\|gb\|AAG46129.1\|AC082644_11 hypothetical protein [Oryza sativa]	8.0E-11	[186..277]	[129..221]

Back

Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALVEEIDK KTYNPDIYFT SLDPQARRYT SKKINKQGTI STSRPVKRIN YSLADLEARL  60
   61 YTSRSEGDGN SISRQDDRNS KNSHSFEERY TQQEILQSDR RFMELNTENF SDLPNVPTLL 120
  121 SDLTGVPRDR IESTTKPISQ TSDGLSALMG GSSFVKEHSK YGHGWVLKPE TLREIQLSYK 180
  181 ST

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [183-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLPKPKRKNT NRIVALKKVL SSKRNLHSFL DSALLNLMDK NVIYHNVYNK RYFKVLPLIT  60
   61 TCSICGGYDS ISSCVNCGNK ICSVSCFKLH NETRCRNR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits