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View Structure Prediction Details

Protein: YML6
Organism: Saccharomyces cerevisiae
Length: 286 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YML6.

Description E-value Query
Range		 Subject
Range
gi|151946136 - gi|151946136|gb|EDN64367.1| conserved protein [Saccharomyces cerevisiae YJM789]
RL4P_YEAST - 54S ribosomal protein YmL6, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
YML6 - Mitochondrial ribosomal protein of the large subunit, has similarity to E. coli L4 ribosomal protein...
 6.0E-73 [1..286] [1..286]
gi|55715752 - gb|AAH86149.1| Unknown (protein for MGC:98570) [Xenopus laevis]
RM04_MOUSE - 39S ribosomal protein L4, mitochondrial OS=Mus musculus GN=Mrpl4 PE=1 SV=1
 3.0E-67 [9..275] [19..272]
gi|12653925, gi|... - gi|22547140|ref|NP_666500.1| mitochondrial ribosomal protein L4 isoform b [Homo sapiens], gi|1265392...
 2.0E-66 [11..230] [21..251]
RL4_GEOSE - 50S ribosomal protein L4 OS=Geobacillus stearothermophilus GN=rplD PE=1 SV=1
 2.0E-62 [39..275] [2..205]
RL4_BACHD - 50S ribosomal protein L4 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9...
RL4_BACHD - 50S ribosomal protein L4 OS=Bacillus halodurans GN=rplD PE=3 SV=1
 3.0E-60 [39..275] [2..205]
RL4A_ARATH - 60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1
 2.0E-59 [35..272] [4..266]
gi|15293869 - gi|15293869|gb|AAK95127.1|AF401555_1 ribosomal protein L4 [Ictalurus punctatus]
 2.0E-59 [35..272] [2..260]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 5.0E-59 [36..274] [4..261]
RL4_PRUAR - 60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1
 5.0E-58 [35..272] [6..268]

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Predicted Domain #1
Region A:
Residues: [1-286] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIKRNLVKT LQSIRYQATT ATAHAESTLN PLPNAAIPPK YALVTVRSFP SLEPLTFVPV  60
   61 PTSTVAAPLR RDILWRAVVY ENDNRRVGAS NPPGRSENGF SRRKLMPQKG SGRARVGDAN 120
  121 SPTRHNGGRA LARTAPNDYT TELPSKVYSM AFNNALSHQY KSGKLFVIGG EKVDLISPTP 180
  181 ELDLNRLDLV NTNTVEGKEI FEGEVIFRKF LEEFQLKGKR LLFITDKTRE GLIKSSDPYK 240
  241 QKVDVIQKEL VEVNDILRAQ AVFIELEALE YLAMAHQKEI LHSVSN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 108.440336
Match: 1dmgA_
Description: Ribosomal protein L4
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.46714384821627 bayes_pls_golite062009
structural molecule activity 8.89019844429202 bayes_pls_golite062009
binding 1.20549540301208 bayes_pls_golite062009
protein binding 0.69049990447008 bayes_pls_golite062009
nucleic acid binding 0.570954007051262 bayes_pls_golite062009
RNA binding 0.514741551458219 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle