YRC Public Data Repository - Protein Structure Prediction

Protein:	YML020W
Organism:	Saccharomyces cerevisiae
Length:	664 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YML020W.

Description	E-value	Query Range	Subject Range
gi\|51012909 - gi\|51012909\|gb\|AAT92748.1\| YML020W [Saccharomyces cerevisiae]	1414.0	[0..1]	[664..1]
gi\|49525976 - gi\|49525976\|emb\|CAG59595.1\| unnamed protein product [Candida glabrata] gi\|50288477, gi\|... - gi\|50288477\|ref\|XP_446668.1\| unnamed protein product [Candida glabrata], gi\|49525976\|emb\|CAG59595.1\|...	651.0	[0..112]	[664..18]
gi\|50303289, gi\|... - gi\|50303289\|ref\|XP_451586.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640718\|emb\|CAH0197... gi\|49640718 - gi\|49640718\|emb\|CAH01979.1\| KLLA0B01243p [Kluyveromyces lactis]	609.0	[0..24]	[664..28]
gi\|44983998, gi\|... - gi\|45190930\|ref\|NP_985184.1\| AER328Wp [Ashbya gossypii ATCC 10895], gi\|44983998\|gb\|AAS53008.1\| AER32... gi\|44983998 - gi\|44983998\|gb\|AAS53008.1\| AER328Wp [Ashbya gossypii ATCC 10895]	602.0	[0..115]	[664..143]
gi\|68479797, gi\|... - gi\|68479797\|ref\|XP_716068.1\| hypothetical protein CaO19.7403 [Candida albicans SC5314], gi\|46437719\|... orf19.7403 - orf19.7403 CGDID:CAL0005424 Assembly 19, Contig19-2514 (22648, 20393) CDS, reverse complemented, tra...	394.0	[0..294]	[661..352]
gi\|50420021, gi\|... - gi\|50420021\|ref\|XP_458543.1\| hypothetical protein DEHA0D02409g [Debaryomyces hansenii CBS767], gi\|49...	384.0	[0..280]	[661..442]
gi\|49648549, gi\|... - gi\|50550417\|ref\|XP_502681.1\| hypothetical protein [Yarrowia lipolytica], gi\|49648549\|emb\|CAG80869.1\|...	353.0	[0..293]	[661..551]
gi\|90298385, gi\|... - gi\|90298385\|gb\|EAS28016.1\| hypothetical protein CIMG_09220 [Coccidioides immitis RS], gi\|119174476\|r...	276.0	[0..288]	[664..488]
gi\|67515623, gi\|... - gi\|67515623\|ref\|XP_657697.1\| hypothetical protein AN0093.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	275.0	[0..3]	[645..221]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTTPLHSSP KSSLKSSTTS LRSVHTQSGR MGPSEPKHRT TKSWSIWGGN DEEEPELSNK  60
   61 NKGKETAQDN SQENDNVSNE GTRLHDNQQT TILKETTRIE KGEKDKKDRN AAIVEKNTRP 120
  121 RAWPFFWGRN KKDPEPTHNI PTDADNNTLS RLANSLNPAP LTNTYIPYKP DAILIRDKGV 180
  181 KTAKKLTDDI GNQFPNIVVP SFDILPKQTI WNTVTSTIWK WKTEYWDRRP SSRVREGEEQ 240
  241 VQHSQNQLKE ETNTVANEAK DEERLEHNRG SLFRV

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	12.74
Match:
Description:	No description for 1ldvA was found.

Predicted Domain #2

Region A:
Residues: [276-351]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPWKKINLLS DYQSRPIRVL IVGVHGFFPT KIIRPFIGEP TGTSTKFVTE AEEIVKEYFD  60
   61 QHKVPIEISK IALERE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.935	d.43.1	Elongation factor Ts (EF-Ts), dimerisation domain

Predicted Domain #3

Region A:
Residues: [352-564]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEIFDRVDFF YEVMKHWSKE INNSDFIYFV SHSQGCPVTI MLLAKLIKNG IINLDNSQFF  60
   61 NDEIQFCSSK KIISVLAMAG INNGPFYGAD QTLFVRAYQT IEKDSLRELF EFQKFDSKQS 120
  121 QSFIEGLRTI ISNNVKITFV GSINDQLVPL YSSTCLFANH PNIFRAIFID RGSQTPAFIT 180
  181 RIVKIAGSLL NLGYNDHGII KEISGSLAGT LTG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [565-664]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGHSTIYNEK QVYHLGIKFA LETTDLSEMY PIEYSPYKLS ELGANPYRLP WCMRGLMYES  60
   61 NKHFSNEEIK MLFKEFEEWE PETKQLKDIK NRLNGLKYRL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.923	a.118.8	TPR-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits