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View Structure Prediction Details

Protein: ERV25
Organism: Saccharomyces cerevisiae
Length: 211 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERV25.

Description E-value Query
Range
Subject
Range
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1
6.0E-59 [3..211] [12..227]
gi|17064083 - gi|17064083|gb|AAL35268.1|AF441399_1 p25 [Homo sapiens]
2.0E-57 [8..211] [4..214]
CE24533 - status:Confirmed UniProt:Q9U1Z4 protein_id:CAB60397.1
3.0E-57 [7..211] [3..211]
TMEDA_MESAU - Transmembrane protein Tmp21 OS=Mesocricetus auratus GN=TMED10 PE=1 SV=1
2.0E-56 [7..211] [18..218]
TMEDA_RABIT - Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1
2.0E-56 [7..211] [18..218]
TMEDA_RAT - Transmembrane emp24 domain-containing protein 10 OS=Rattus norvegicus GN=Tmed10 PE=1 SV=2
1.0E-55 [7..211] [2..202]

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Predicted Domain #1
Region A:
Residues: [1-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVLQLWLTT LISLVVAVQG LHFDIAASTD PEQVCIRDFV TEGQLVVADI HSDGSVGDGQ  60
   61 KLNLFVRDSV GNEYRRKRDF AGDVRVAFTA PSSTAFDVCF ENQAQYRGRS LSRAIELDIE 120
  121 SGAEARDWNK ISANEKLKPI EVELRRVEEI TDEIVDELTY LKNREERLRD TNESTNRRVR 180
  181 NFSILVIIVL SSLGVWQVNY LKNYFKTKHI I

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 82.283997
Match: PF01105
Description: emp24/gp25L/p24 family/GOLD

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle