| Protein: | SPT5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1063 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPT5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1063] | [1..1063] |
|
|
0.0 | [107..1062] | [2..971] |
|
|
0.0 | [107..1062] | [2..965] |
|
|
0.0 | [107..1060] | [2..967] |
|
|
0.0 | [123..1025] | [5..886] |
|
|
0.0 | [490..917] | [1..427] |
|
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4.0E-87 | [210..636] | [11..359] |
|
|
6.0E-70 | [715..1030] | [1423..1761] |
|
Region A: Residues: [1-232] |
1 11 21 31 41 51
| | | | | |
1 MSDNSDTNVS MQDHDQQFAD PVVVPQSTDT KDENTSDKDT VDSGNVTTTE STERAESTSN 60
61 IPPLDGEEKE AKSEPQQPED NAETAATEQV SSSNGPATDD AQATLNTDSS EANEIVKKEE 120
121 GSDERKRPRE EDTKNSDGDT KDEGDNKDED DDEDDDDDDD DEDDDDEAPT KRRRQERNRF 180
181 LDIEAEVSDD EDEDEDEEDS ELVREGFITH GDDEDDEASA PGARRDDRLH RQ
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [233-314] |
1 11 21 31 41 51
| | | | | |
1 LDQDLNKTSE EDAQRLAKEL RERYGRSSSK QYRAAAQDGY VPQRFLLPSV DTATIWGVRC 60
61 RPGKEKELIR KLLKKKFNLD RA
|
| Detection Method: | |
| Confidence: | 13.366532 |
| Match: | PF03439 |
| Description: | Supt5 repeat |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [315-381] |
1 11 21 31 41 51
| | | | | |
1 MGKKKLKILS IFQRDNYTGR IYIEAPKQSV IEKFCNGVPD IYISQKLLIP VQELPLLLKP 60
61 NKSDDVA
|
| Detection Method: | |
| Confidence: | 15.09691 |
| Match: | PF03439 |
| Description: | Supt5 repeat |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [382-440] |
1 11 21 31 41 51
| | | | | |
1 LEEGSYVRIK RGIYKGDLAM VDQISENNLE VMLKIVPRLD YGKFDEIDPT TQQRKSRRP
|
| Detection Method: | |
| Confidence: | 5.200659 |
| Match: | PF00467 |
| Description: | KOW motif |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.639 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.636 | N/A | N/A | b.55.1 | PH domain-like |
| View | Download | 0.578 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.572 | N/A | N/A | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.511 | N/A | N/A | d.58.49 | YajQ-like |
|
Region A: Residues: [441-531] |
1 11 21 31 41 51
| | | | | |
1 TFAHRAPPQL FNPTMALRLD QANLYKRDDR HFTYKNEDYI DGYLYKSFRI QHVETKNIQP 60
61 TVEELARFGS KEGAVDLTSV SQSIKKAQAA K
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.636 | b.55.1 | PH domain-like |
| View | Download | 0.639 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.511 | d.58.49 | YajQ-like |
| View | Download | 0.572 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.471 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.368 | a.134.1 | Fungal elicitin |
| View | Download | 0.359 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.330 | g.52.1 | Inhibitor of apoptosis (IAP) repeat |
| View | Download | 0.321 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.295 | b.114.1 | N-utilization substance G protein NusG, insert domain |
| View | Download | 0.271 | a.77.1 | DEATH domain |
| View | Download | 0.243 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.236 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.227 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.204 | c.30.1 | PreATP-grasp domain |
|
Region A: Residues: [532-570] |
1 11 21 31 41 51
| | | | | |
1 VTFQPGDRIE VLNGEQRGSK GIVTRTTKDI ATIKLNGFT
|
| Detection Method: | |
| Confidence: | 2.744727 |
| Match: | PF00467 |
| Description: | KOW motif |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [571-617] |
1 11 21 31 41 51
| | | | | |
1 TPLEFPISTL RKIFEPGDHV TVINGEHQGD AGLVLMVEQG QVTFMST
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | PF00467 |
| Description: | KOW motif |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [618-794] |
1 11 21 31 41 51
| | | | | |
1 QTSREVTITA NNLSKSIDTT ATSSEYALHD IVELSAKNVA CIIQAGHDIF KVIDETGKVS 60
61 TITKGSILSK INTARARVSS VDANGNEIKI GDTIVEKVGS RREGQVLYIQ TQQIFVVSKK 120
121 IVENAGVFVV NPSNVEAVAS KDNMLSNKMD LSKMNPEIIS KMGPPSSKTF QQPIQSR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [795-842] |
1 11 21 31 41 51
| | | | | |
1 GGREVALGKT VRIRSAGYKG QLGIVKDVNG DKATVELHSK NKHITIDK
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | PF00467 |
| Description: | KOW motif |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [843-908] |
1 11 21 31 41 51
| | | | | |
1 HKLTYYNREG GEGITYDELV NRRGRVPQAR MGPSYVSAPR NMATGGIAAG AAATSSGLSG 60
61 GMTPGW
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.287 | a.4.1 | Homeodomain-like |
| View | Download | 0.301 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.302 | a.28.1 | ACP-like |
|
Region A: Residues: [909-1063] |
1 11 21 31 41 51
| | | | | |
1 SSFDGGKTPA VNAHGGSGGG GVSSWGGAST WGGQGNGGAS AWGGAGGGAS AWGGQGTGAT 60
61 STWGGASAWG NKSSWGGAST WASGGESNGA MSTWGGTGDR SAYGGASTWG GNNNNKSTRD 120
121 GGASAWGNQD DGNRSAWNNQ GNKSNYGGNS TWGGH
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 1deqA_ |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
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