YRC Public Data Repository - Protein Structure Prediction

Protein:	GAB1
Organism:	Saccharomyces cerevisiae
Length:	394 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAB1.

Description	E-value	Query Range	Subject Range
gi\|17104707, gi\|... - gi\|18391427\|ref\|NP_563912.1\| cell division cycle protein-related [Arabidopsis thaliana], gi\|17104707...	369.0	[0..12]	[379..24]
SPAC1952.01 - Pig-U PIGU_SCHPO - GPI transamidase component GAB1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SP...	326.0	[0..6]	[380..7]
gi\|48686501 - gi\|48686501\|emb\|CAF34428.1\| GPI-anchor transamidase component [Saccharomyces uvarum]	321.0	[0..1]	[394..1]
gi\|48686503 - gi\|48686503\|emb\|CAF34429.1\| GPI-anchor transamidase component [Saccharomyces bayanus] gi\|48686505 - gi\|48686505\|emb\|CAF34430.1\| GPI-anchor transamidase component [Saccharomyces pastorianus]	321.0	[0..1]	[394..1]
gi\|220960092 - gi\|220960092\|gb\|ACL92582.1\| CG13089-PA [synthetic construct] CG13089-PA - This gene is referred to in FlyBase by the symbol Dmel\CG13089 (CG13089, FBgn0032052). It is a prote...	320.0	[0..1]	[380..1]
gi\|115932072, gi... - gi\|115932072\|ref\|XP_001188803.1\| PREDICTED: similar to Pigm protein [Strongylocentrotus purpuratus],...	313.0	[0..13]	[339..12]
gi\|22761696 - gi\|22761696\|dbj\|BAC11660.1\| unnamed protein product [Homo sapiens]	309.0	[0..22]	[380..20]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSTALKVAL GCIAIRLAVN SLFPSLQQQL DQSVEFSTPV TSFRSLQEGI YLLRNNIQVY  60
   61 NHGVVHHPPI LIFFLSLFNS DRLISLIYAL IDGLIAYQLT EVTKAFKNLK LKVWLPGLLY 120
  121 AVNPLTL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [128-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSCISRSSII FTNFAISSSL YCILAEGNVL LSSVMISISG YLSVYPILLL IPLLGMLKSW  60
   61 R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [189-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRILSAIVSI LSLLILLLFS YSILGSQSWS FLTQVYGSII TFEKVFPNLG LWWYFFIEMF  60
   61 DTFIPFFKAV FNIFIAVFIT PFTLRYHKQP FYAFILCIGW IVLTKPYPSL GDAGFFFSFL 120
  121 PFFTPLFGYL R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [320-394]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPIISALLFL HAIVLAPIFY HLWVVLGSGN SNFFYAISLV YALAIASILV DLNWAMLRIE  60
   61 YDNGIPNFKL KVTQI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits