| Protein: | RPL6B |
| Organism: | Saccharomyces cerevisiae |
| Length: | 176 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL6B.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-71 | [4..176] | [118..296] |
|
|
5.0E-70 | [4..176] | [110..288] |
|
|
5.0E-70 | [4..176] | [119..297] |
|
|
1.0E-66 | [4..176] | [110..288] |
|
|
4.0E-66 | [4..176] | [82..260] |
|
|
9.0E-61 | [1..176] | [1..176] |
|
Region A: Residues: [1-176] |
1 11 21 31 41 51
| | | | | |
1 MTAQQAPKWY PSEDVAAPKK TRKAVRPQKL RASLVPGTVL ILLAGRFRGK RVVYLKHLED 60
61 NTLLVTGPFK VNGVPLRRVN ARYVIATSTK VSVEGVNVEK FNVEYFAKEK LTKKEKKEAN 120
121 LFPEQQTKEI KTERVEDQKV VDKALLAEIK KTPLLKQYLS ASFSLKNGDK PHLLKF
|
| Detection Method: |  |
| Confidence: | 69.552842 |
| Match: | PF01159 |
| Description: | Ribosomal protein L6e |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| structural constituent of ribosome | 9.75663213016935 | bayes_pls_golite062009 |
| structural molecule activity | 9.17485893013108 | bayes_pls_golite062009 |
| RNA binding | 1.4457902513736 | bayes_pls_golite062009 |
| binding | 1.44371103155512 | bayes_pls_golite062009 |
| nucleic acid binding | 1.35678179370806 | bayes_pls_golite062009 |
| transcription regulator activity | 1.26877481073647 | bayes_pls_golite062009 |
| DNA binding | 0.809544484035708 | bayes_pls_golite062009 |
| translation regulator activity | 0.20179424040045 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.177099375659271 | bayes_pls_golite062009 |
| transcription factor activity | 0.145799514762697 | bayes_pls_golite062009 |
| protein binding | 0.096241933308752 | bayes_pls_golite062009 |
|
Region A: Residues: [81-176] |
1 11 21 31 41 51
| | | | | |
1 ARYVIATSTK VSVEGVNVEK FNVEYFAKEK LTKKEKKEAN LFPEQQTKEI KTERVEDQKV 60
61 VDKALLAEIK KTPLLKQYLS ASFSLKNGDK PHLLKF
|
| Detection Method: | |
| Confidence: | 36.657577 |
| Match: | PF01159.10 |
| Description: | No description for PF01159.10 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
